SMTL ID : 3pu0.1

Crystal Structure of a vesicular stomatitis virus nucleocapsid-polyC complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

homo-10-mer

Ligands

40 x IUM: URANYL (VI) ION(Non-covalent)(Non-functional Binders)

IUM.1: 1 residues within 4Å: Chain A: D.122 Ligand excluded by PLIP IUM.2: 3 residues within 4Å: Chain A: E.252, E.322 Chain B: D.342 Ligand excluded by PLIP IUM.3: 2 residues within 4Å: Chain A: D.357 Chain E: D.383 Ligand excluded by PLIP IUM.4: 2 residues within 4Å: Chain A: D.383 Chain B: D.357 Ligand excluded by PLIP IUM.5: 1 residues within 4Å: Chain B: D.122 Ligand excluded by PLIP IUM.6: 3 residues within 4Å: Chain B: E.252, E.322 Chain C: D.342 Ligand excluded by PLIP IUM.7: 1 residues within 4Å: Chain B: D.383 Ligand excluded by PLIP IUM.8: 1 residues within 4Å: Chain C: D.122 Ligand excluded by PLIP IUM.9: 3 residues within 4Å: Chain C: E.252, E.322 Chain D: D.342 Ligand excluded by PLIP IUM.10: 2 residues within 4Å: Chain C: D.383 Chain D: D.357 Ligand excluded by PLIP IUM.11: 1 residues within 4Å: Chain D: D.122 Ligand excluded by PLIP IUM.12: 3 residues within 4Å: Chain D: E.252, E.322 Chain K: D.342 Ligand excluded by PLIP IUM.13: 1 residues within 4Å: Chain E: D.122 Ligand excluded by PLIP IUM.14: 3 residues within 4Å: Chain A: D.342 Chain E: E.252, E.322 Ligand excluded by PLIP IUM.15: 2 residues within 4Å: Chain E: D.357 Chain J: D.383 Ligand excluded by PLIP IUM.16: 2 residues within 4Å: Chain F: C.4, C.6 Ligand excluded by PLIP IUM.17: 2 residues within 4Å: Chain F: C.14, C.15 Ligand excluded by PLIP IUM.18: 2 residues within 4Å: Chain F: C.23, C.24 Ligand excluded by PLIP IUM.19: 3 residues within 4Å: Chain F: C.31, C.32, C.33 Ligand excluded by PLIP IUM.20: 2 residues within 4Å: Chain F: C.40, C.42 Ligand excluded by PLIP IUM.21: 1 residues within 4Å: Chain G: D.122 Ligand excluded by PLIP IUM.22: 3 residues within 4Å: Chain G: E.252, E.322 Chain H: D.342 Ligand excluded by PLIP IUM.23: 2 residues within 4Å: Chain G: D.357 Chain K: D.383 Ligand excluded by PLIP IUM.24: 2 residues within 4Å: Chain G: D.383 Chain H: D.357 Ligand excluded by PLIP IUM.25: 1 residues within 4Å: Chain H: D.122 Ligand excluded by PLIP IUM.26: 3 residues within 4Å: Chain H: E.252, E.322 Chain I: D.342 Ligand excluded by PLIP IUM.27: 1 residues within 4Å: Chain H: D.383 Ligand excluded by PLIP IUM.28: 1 residues within 4Å: Chain I: D.122 Ligand excluded by PLIP IUM.29: 3 residues within 4Å: Chain I: E.252, E.322 Chain J: D.342 Ligand excluded by PLIP IUM.30: 2 residues within 4Å: Chain I: D.383 Chain J: D.357 Ligand excluded by PLIP IUM.31: 1 residues within 4Å: Chain J: D.122 Ligand excluded by PLIP IUM.32: 3 residues within 4Å: Chain E: D.342 Chain J: E.252, E.322 Ligand excluded by PLIP IUM.33: 1 residues within 4Å: Chain K: D.122 Ligand excluded by PLIP IUM.34: 3 residues within 4Å: Chain G: D.342 Chain K: E.252, E.322 Ligand excluded by PLIP IUM.35: 2 residues within 4Å: Chain D: D.383 Chain K: D.357 Ligand excluded by PLIP IUM.36: 2 residues within 4Å: Chain L: C.4, C.6 Ligand excluded by PLIP IUM.37: 2 residues within 4Å: Chain L: C.14, C.15 Ligand excluded by PLIP IUM.38: 2 residues within 4Å: Chain L: C.23, C.24 Ligand excluded by PLIP IUM.39: 3 residues within 4Å: Chain L: C.31, C.32, C.33 Ligand excluded by PLIP IUM.40: 2 residues within 4Å: Chain L: C.40, C.42 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, T.J. et al., Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus. J.Virol. (2011)

Release Date

2011-01-12

Peptides

Nucleoprotein: ABCDEGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

G
A

H
B

I
C

J
D

K
E

Nucleoprotein

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