SMTL ID : 3pu1.1

Crystal Structure of a vesicular stomatitis virus nucleocapsid-polyG complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.14 Å

Oligo State

homo-10-mer

Ligands

40 x IUM: URANYL (VI) ION(Non-functional Binders)(Non-covalent)

IUM.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.2: 3 residues within 4Å: Chain A: E.252, E.322 Chain B: D.342 Ligand excluded by PLIP IUM.3: 2 residues within 4Å: Chain A: D.357 Chain E: D.383 Ligand excluded by PLIP IUM.4: 2 residues within 4Å: Chain A: D.383 Chain B: D.357 Ligand excluded by PLIP IUM.5: 3 residues within 4Å: Chain A: D.342 Chain E: E.252, E.322 Ligand excluded by PLIP IUM.6: 2 residues within 4Å: Chain B: Q.56, D.122 Ligand excluded by PLIP IUM.7: 3 residues within 4Å: Chain B: E.252, E.322 Chain C: D.342 Ligand excluded by PLIP IUM.8: 1 residues within 4Å: Chain B: D.383 Ligand excluded by PLIP IUM.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.10: 2 residues within 4Å: Chain C: E.252, E.322 Ligand excluded by PLIP IUM.11: 2 residues within 4Å: Chain C: D.383 Chain D: D.357 Ligand excluded by PLIP IUM.12: 2 residues within 4Å: Chain D: Q.56, D.122 Ligand excluded by PLIP IUM.13: 3 residues within 4Å: Chain D: E.252, E.322 Chain K: D.342 Ligand excluded by PLIP IUM.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.15: 2 residues within 4Å: Chain E: D.357 Chain J: D.383 Ligand excluded by PLIP IUM.16: 3 residues within 4Å: Chain F: G.4, G.6, G.7 Ligand excluded by PLIP IUM.17: 3 residues within 4Å: Chain F: G.13, G.14, G.15 Ligand excluded by PLIP IUM.18: 2 residues within 4Å: Chain F: G.23, G.24 Ligand excluded by PLIP IUM.19: 2 residues within 4Å: Chain F: G.33, G.34 Ligand excluded by PLIP IUM.20: 3 residues within 4Å: Chain E: R.145 Chain F: G.41, G.42 Ligand excluded by PLIP IUM.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.22: 3 residues within 4Å: Chain G: E.252, E.322 Chain H: D.342 Ligand excluded by PLIP IUM.23: 2 residues within 4Å: Chain G: D.357 Chain K: D.383 Ligand excluded by PLIP IUM.24: 2 residues within 4Å: Chain G: D.383 Chain H: D.357 Ligand excluded by PLIP IUM.25: 3 residues within 4Å: Chain G: D.342 Chain K: E.252, E.322 Ligand excluded by PLIP IUM.26: 2 residues within 4Å: Chain H: Q.56, D.122 Ligand excluded by PLIP IUM.27: 3 residues within 4Å: Chain H: E.252, E.322 Chain I: D.342 Ligand excluded by PLIP IUM.28: 1 residues within 4Å: Chain H: D.383 Ligand excluded by PLIP IUM.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.30: 2 residues within 4Å: Chain I: E.252, E.322 Ligand excluded by PLIP IUM.31: 2 residues within 4Å: Chain I: D.383 Chain J: D.357 Ligand excluded by PLIP IUM.32: 2 residues within 4Å: Chain J: Q.56, D.122 Ligand excluded by PLIP IUM.33: 3 residues within 4Å: Chain E: D.342 Chain J: E.252, E.322 Ligand excluded by PLIP IUM.34: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.35: 2 residues within 4Å: Chain D: D.383 Chain K: D.357 Ligand excluded by PLIP IUM.36: 3 residues within 4Å: Chain L: G.4, G.6, G.7 Ligand excluded by PLIP IUM.37: 3 residues within 4Å: Chain L: G.13, G.14, G.15 Ligand excluded by PLIP IUM.38: 2 residues within 4Å: Chain L: G.23, G.24 Ligand excluded by PLIP IUM.39: 2 residues within 4Å: Chain L: G.33, G.34 Ligand excluded by PLIP IUM.40: 3 residues within 4Å: Chain K: R.145 Chain L: G.41, G.42 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, T.J. et al., Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus. J.Virol. (2011)

Release Date

2011-01-12

Peptides

Nucleoprotein: ABCDEGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

G
A

H
B

I
C

J
D

K
E

Nucleoprotein

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