- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GLV: GLYOXYLIC ACID(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: D.52, E.158, D.192
- Ligands: GLV.1, K.9
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.52, A:E.158, A:D.192, H2O.2
MG.12: 5 residues within 4Å:- Chain B: D.52, E.158, D.192
- Ligands: GLV.11, K.19
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.52, B:E.158, B:D.192, H2O.5
MG.22: 5 residues within 4Å:- Chain C: D.52, E.158, D.192
- Ligands: GLV.21, K.29
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.52, C:E.158, C:D.192, H2O.8
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 6 residues within 4Å:- Chain A: R.4, V.226, A.227, G.252
- Chain B: R.198
- Ligands: K.8
Ligand excluded by PLIPCL.4: 5 residues within 4Å:- Chain A: R.89, D.90, S.91, P.92, R.95
Ligand excluded by PLIPCL.5: 2 residues within 4Å:- Chain A: P.207, A.208
Ligand excluded by PLIPCL.6: 5 residues within 4Å:- Chain A: R.218
- Chain B: R.218
- Chain C: R.218
- Ligands: CL.16, CL.26
Ligand excluded by PLIPCL.13: 6 residues within 4Å:- Chain B: R.4, V.226, A.227, G.252
- Chain C: R.198
- Ligands: K.18
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain B: R.89, D.90, S.91, P.92, R.95
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain B: P.207, A.208
Ligand excluded by PLIPCL.16: 5 residues within 4Å:- Chain A: R.218
- Chain B: R.218
- Chain C: R.218
- Ligands: CL.6, CL.26
Ligand excluded by PLIPCL.23: 6 residues within 4Å:- Chain A: R.198
- Chain C: R.4, V.226, A.227, G.252
- Ligands: K.28
Ligand excluded by PLIPCL.24: 5 residues within 4Å:- Chain C: R.89, D.90, S.91, P.92, R.95
Ligand excluded by PLIPCL.25: 2 residues within 4Å:- Chain C: P.207, A.208
Ligand excluded by PLIPCL.26: 5 residues within 4Å:- Chain A: R.218
- Chain B: R.218
- Chain C: R.218
- Ligands: CL.6, CL.16
Ligand excluded by PLIP- 12 x K: POTASSIUM ION(Non-covalent)
K.7: 5 residues within 4Å:- Chain A: M.173, G.174, K.175, N.178, E.181
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:M.173, A:K.175, A:N.178, A:E.181, H2O.1
K.8: 5 residues within 4Å:- Chain A: S.217, S.221, G.252
- Chain B: M.197
- Ligands: CL.3
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Metal complexes: B:M.197, A:S.217, A:S.221
K.9: 5 residues within 4Å:- Chain A: E.51, D.52, E.123, D.192
- Ligands: MG.2
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.51, A:D.52, A:D.192, H2O.2
K.10: 3 residues within 4Å:- Chain A: P.176, N.178, N.179
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:P.176, A:N.178
K.17: 5 residues within 4Å:- Chain B: M.173, G.174, K.175, N.178, E.181
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:M.173, B:K.175, B:N.178, B:E.181, H2O.3
K.18: 5 residues within 4Å:- Chain B: S.217, S.221, G.252
- Chain C: M.197
- Ligands: CL.13
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Metal complexes: B:S.217, B:S.221, C:M.197
K.19: 5 residues within 4Å:- Chain B: E.51, D.52, E.123, D.192
- Ligands: MG.12
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.51, B:D.52, B:D.192, H2O.5
K.20: 3 residues within 4Å:- Chain B: P.176, N.178, N.179
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:P.176, B:N.178
K.27: 5 residues within 4Å:- Chain C: M.173, G.174, K.175, N.178, E.181
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:M.173, C:K.175, C:N.178, C:E.181, H2O.6
K.28: 5 residues within 4Å:- Chain A: M.197
- Chain C: S.217, S.221, G.252
- Ligands: CL.23
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Metal complexes: A:M.197, C:S.217, C:S.221
K.29: 5 residues within 4Å:- Chain C: E.51, D.52, E.123, D.192
- Ligands: MG.22
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.51, C:D.52, C:D.192, H2O.8
K.30: 3 residues within 4Å:- Chain C: P.176, N.178, N.179
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:P.176, C:N.178
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bracken, C.D. et al., Crystal structures of a halophilic archaeal malate synthase from Haloferax volcanii and comparisons with isoforms A and G. Bmc Struct.Biol. (2011)
- Release Date
- 2011-06-01
- Peptides
- Malate Synthase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GLV: GLYOXYLIC ACID(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bracken, C.D. et al., Crystal structures of a halophilic archaeal malate synthase from Haloferax volcanii and comparisons with isoforms A and G. Bmc Struct.Biol. (2011)
- Release Date
- 2011-06-01
- Peptides
- Malate Synthase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A