SMTL ID : 3py1.1

CDK2 ternary complex with SU9516 and ANS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: L.74, L.75, D.76, V.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.76

1 x SU9: (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE(Non-covalent)

SU9.2: 15 residues within 4Å: Chain A: I.18, V.26, A.39, V.72, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, K.97, L.142, D.153 Ligands: 2AN.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.18, A:V.26, A:V.72, A:F.88, A:F.88, A:L.142, A:L.142 Hydrogen bonds: A:E.89, A:L.91, A:L.91, A:D.94, A:D.153

2 x 2AN: 8-ANILINO-1-NAPHTHALENE SULFONATE(Non-covalent)

2AN.3: 12 residues within 4Å: Chain A: L.45, V.52, I.57, I.60, K.64, L.74, V.77, H.79, L.84, L.86, F.160 Ligands: 2AN.4 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.45, A:V.52, A:I.57, A:I.60, A:K.64, A:L.74, A:V.77, A:L.84, A:L.86, A:F.160, A:F.160 Salt bridges: A:K.64, A:H.79 2AN.4: 15 residues within 4Å: Chain A: Y.23, K.41, I.43, I.60, L.63, K.64, V.72, L.86, F.88, A.152, D.153, F.154, L.156 Ligands: SU9.2, 2AN.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.23, A:I.43, A:L.63, A:K.64, A:V.72, A:L.86, A:F.88, A:L.156, A:L.156 Hydrogen bonds: A:K.41, A:K.41, A:D.153, A:F.154 Salt bridges: A:K.41 pi-Cation interactions: A:K.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Betzi, S. et al., Discovery of a Potential Allosteric Ligand Binding Site in CDK2. Acs Chem.Biol. (2011)

Release Date

2011-02-16

Peptides

Cell division protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein kinase 2

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