SMTL ID : 3q60.1

Crystal structure of virulent allele ROP5B pseudokinase domain bound to ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: R.71, G.73, D.74, R.75, S.76, V.78, A.91, K.93, L.134, M.167, P.168, A.169, A.170, D.173, D.223, F.226 Ligands: MG.3, MG.4 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:R.71, A:D.74, A:R.75, A:S.76, A:P.168, A:A.170, A:D.223 Water bridges: A:V.72, A:R.75, A:R.75, A:R.75, A:R.75, A:K.93, A:K.93, A:H.219, A:H.219 Salt bridges: A:R.75, A:R.75, A:K.93, A:K.93, A:K.93

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 9 residues within 4Å: Chain A: K.93, F.95, L.109, T.113, P.136, L.165, M.167, D.237, V.238 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.165 Hydrogen bonds: A:D.237, A:V.238 Water bridges: A:K.93, A:T.113, A:D.237 Salt bridges: A:K.93

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: K.93, D.237 Ligands: ATP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.237, H2O.5, H2O.8, H2O.9, H2O.41 MG.4: 2 residues within 4Å: Chain A: D.223 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.223, H2O.7, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reese, M.L. et al., A conserved non-canonical motif in the pseudoactive site of the ROP5 pseudokinase domain mediates its effect on Toxoplasma virulence. J.Biol.Chem. (2011)

Release Date

2011-02-23

Peptides

ROP5B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ROP5B

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