SMTL ID : 4lv5.1 (2 other biounits)

Murine IRGa6 bound to Toxoplasma ROP5B, a pseudokinase GDI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: R.71, G.73, D.74, S.76, V.78, A.91, K.93, L.134, M.167, P.168, A.169, A.170, D.173, D.223, F.226 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.74, A:S.76, A:P.168, A:A.170, A:D.223 Water bridges: A:K.93, A:K.93, A:K.93 Salt bridges: A:K.93

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: C.25, E.28, A.29, S.179, F.183 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: L.134, P.136, M.167, G.236, D.237, V.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.237, A:V.238 Water bridges: A:T.113, A:D.237 EDO.4: 5 residues within 4Å: Chain A: A.273, R.341, R.342, R.343, R.344 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.344, A:R.344 EDO.5: 7 residues within 4Å: Chain A: Y.284, F.290, L.291, P.292, F.293, G.294, A.318 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.293, A:G.294 Water bridges: A:L.291, A:W.304, A:S.316 EDO.6: 5 residues within 4Å: Chain A: K.93, F.95, L.109, L.165, D.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.93 Water bridges: A:D.237, A:S.239 EDO.8: 5 residues within 4Å: Chain B: Y.33, K.289, F.380, L.387, Y.402 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.33, B:R.285, B:K.289 EDO.9: 2 residues within 4Å: Chain B: I.304, T.309 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.7: 15 residues within 4Å: Chain B: E.87, T.88, G.89, S.90, G.91, K.92, S.93, S.94, T.112, K.194, D.196, S.197, S.241, N.242, K.243 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.89, B:S.90, B:G.91, B:K.92, B:S.93, B:S.93, B:S.94, B:S.94, B:G.113, B:K.194, B:S.241, B:N.242, B:N.242, B:K.243, B:K.243 Water bridges: B:N.104, B:T.112, B:D.136, B:S.197 Salt bridges: B:D.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reese, M.L. et al., Murine IRGa6 bound to Toxoplasma ROP5B, a pseudokinase GDI. To be Published

Release Date

2013-09-25

Peptides

Rhoptry protein 5B: A
Interferon-inducible GTPase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rhoptry protein 5B

Interferon-inducible GTPase 1

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