SMTL ID : 3q73.1

Cryptococcus neoformans protein farnesyltransferase, apo enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 8 residues within 4Å: Chain A: E.67, K.69, Q.92, Y.93, S.96 Chain B: I.137, E.190 Ligands: 3CX.7 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.67, A:K.69, A:Q.92, A:Q.92, A:S.96, B:E.190 GLC-FRU.2: 11 residues within 4Å: Chain B: T.3, P.47, N.48, E.484, I.485, I.486, V.487, G.488, G.489, K.490 Ligands: 3CX.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.486, B:G.488 Water bridges: B:P.47 GLC-FRU.3: 10 residues within 4Å: Chain A: P.298, L.299, P.300, E.331, Y.332 Chain B: V.13, K.15, P.16, E.307, P.308 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:E.331, B:E.307 Water bridges: A:Q.334, A:Q.334, B:K.15, B:K.15, B:P.16

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain B: D.323, C.325, Y.409, H.410 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.323, B:D.323, B:C.325, B:H.410, H2O.22

3 x 3CX: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid(Non-covalent)

3CX.5: 5 residues within 4Å: Chain B: Y.58, G.489, K.490, D.491 Ligands: GLC-FRU.2 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.490, B:D.491, B:D.491 Water bridges: B:N.492 3CX.6: 4 residues within 4Å: Chain B: R.62, K.63, Q.64, E.65 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.64, B:E.65 3CX.7: 9 residues within 4Å: Chain A: A.64 Chain B: S.123, P.124, K.125, A.133, N.134, S.135, Q.136 Ligands: GLC-FRU.1 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.125 Water bridges: B:S.123 Hydrophobic interactions: A:A.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hast, M.A. et al., Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. (2011)

Release Date

2011-08-03

Peptides

Farnesyltransferase, alpha subunit: A
Farnesyltransferase, beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyltransferase, alpha subunit

Farnesyltransferase, beta subunit

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