SMTL ID : 3q78.1

Cryptococcus neoformans protein farnesyltransferase in complex with FSPP and DDPTASACNIQ peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.323, C.325, Y.409, H.410 Chain C: C.8 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Metal complexes: C:C.8, B:D.323, B:D.323, B:C.325, B:H.410

2 x 3CX: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid(Non-covalent)

3CX.2: 4 residues within 4Å: Chain B: Y.58, G.489, K.490, D.491 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.490, B:D.491, B:D.491 Water bridges: B:Y.58, B:N.492 3CX.3: 4 residues within 4Å: Chain B: R.62, K.63, Q.64, E.65 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.64, B:E.65 Water bridges: B:K.63, B:K.63

1 x FPS: S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

FPS.4: 15 residues within 4Å: Chain A: Y.123, Y.159, H.160 Chain B: W.90, L.141, H.266, G.268, Y.269, C.272, R.317, K.320, Y.326, W.329 Chain C: A.7, I.10 17 PLIP interactions: 1 interactions with chain C, 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: C:I.10, B:W.90, B:L.141, B:Y.269, B:W.329, A:Y.159 Hydrogen bonds: B:R.317, B:K.320, B:Y.326, B:Y.326 Water bridges: B:R.317, B:K.320, B:Y.326, A:K.157 Salt bridges: B:H.266, B:R.317, B:K.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hast, M.A. et al., Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. (2011)

Release Date

2011-08-03

Peptides

Farnesyltransferase alpha subunit: A
Farnesyltransferase beta subunit: B
peptide substrate: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

Farnesyltransferase alpha subunit

Farnesyltransferase beta subunit

peptide substrate

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