SMTL ID : 3qbt.2 (3 other biounits)

Crystal structure of OCRL1 540-678 in complex with Rab8a:GppNHp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.20, T.38 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.20, A:T.38, H2O.2, H2O.2

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 23 residues within 4Å: Chain A: D.14, S.15, G.16, V.17, G.18, K.19, T.20, C.21, F.31, S.33, S.37, T.38, T.62, A.63, G.64, N.119, K.120, D.122, V.123, S.149, A.150, K.151 Ligands: MG.1 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:S.15, A:G.16, A:V.17, A:G.18, A:K.19, A:K.19, A:T.20, A:T.20, A:C.21, A:S.33, A:T.38, A:T.38, A:T.62, A:G.64, A:N.119, A:K.120, A:K.120, A:A.150, A:K.151 Water bridges: A:T.20, A:Q.65, A:Q.65 Salt bridges: A:D.122 pi-Stacking: A:F.31, A:F.31

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: I.39 Chain B: R.32, D.128, Y.129 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Water bridges: B:R.32, B:R.32 Salt bridges: B:R.32 Hydrogen bonds: A:I.39, A:I.39, A:I.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, X. et al., A structural basis for Lowe syndrome caused by mutations in the Rab-binding domain of OCRL1. Embo J. (2011)

Release Date

2011-03-23

Peptides

Ras-related protein Rab-8A: A
Inositol polyphosphate 5-phosphatase OCRL-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ras-related protein Rab-8A

Inositol polyphosphate 5-phosphatase OCRL-1

Related Entries With Identical Sequence