SMTL ID : 3tnf.1

LidA from Legionella in complex with active Rab8a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.19, T.20, T.38, D.61, T.62 Ligands: GNP.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.20, A:T.38, A:T.62

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: D.14, S.15, G.16, V.17, G.18, K.19, T.20, C.21, F.31, N.32, S.33, F.35, S.37, T.38, A.63, G.64, N.119, K.120, D.122, V.123, S.149, A.150, K.151 Chain B: Y.333 Ligands: MG.1 25 PLIP interactions: 24 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.15, A:G.16, A:V.17, A:G.18, A:K.19, A:K.19, A:T.20, A:C.21, A:N.32, A:T.38, A:T.38, A:T.62, A:G.64, A:N.119, A:K.120, A:K.120, A:A.150, A:K.151 Water bridges: A:Q.65, A:Q.65, B:Y.333 Salt bridges: A:D.122 pi-Stacking: A:F.31, A:F.31 pi-Cation interactions: A:K.120

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 3 residues within 4Å: Chain A: R.69, W.100, N.103 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.100 Hydrogen bonds: A:R.69 MPD.4: 6 residues within 4Å: Chain A: W.60, Y.75, R.77 Chain B: L.207, I.210, N.211 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.75, B:I.210 MPD.5: 10 residues within 4Å: Chain B: L.55, T.56, S.58, E.59, E.60, L.135, K.136, A.194, L.195, K.198 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.194, B:L.195, B:K.198 Hydrogen bonds: B:L.61 MPD.6: 5 residues within 4Å: Chain B: G.34, L.37, E.38, T.351, H.354 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.38, B:T.351 Hydrogen bonds: B:G.34, B:L.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schoebel, S. et al., Protein LidA from Legionella is a Rab GTPase supereffector. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-11-02

Peptides

Ras-related protein Rab-8A: A
LidA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-8A

LidA

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