SMTL ID : 3qbx.1

Crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-actetylmuramic acid kinase (ANMK) bound to 1,6-anhydro-n-actetylmuramic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x AH0: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID(Non-covalent)

AH0.1: 14 residues within 4Å: Chain A: T.11, T.97, H.100, R.129, A.140, P.141, L.142, V.143, N.162, F.166, N.168, D.182, E.326, F.330 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.97, A:H.100, A:E.326, A:F.330 Hydrogen bonds: A:T.97, A:R.129, A:L.142, A:V.143 Water bridges: A:G.165, A:N.168, A:D.182, A:T.236 Salt bridges: A:R.129 AH0.3: 14 residues within 4Å: Chain B: H.94, T.97, H.100, R.129, A.140, P.141, L.142, V.143, N.162, F.166, N.168, D.182, E.326, F.330 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.97, B:H.100, B:E.326, B:F.330 Hydrogen bonds: B:T.11, B:R.129, B:L.142, B:V.143, B:N.168 Water bridges: B:F.166, B:T.236, B:T.236 Salt bridges: B:R.129

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: G.10, T.11, S.12, G.164, G.165, E.326 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.11, A:S.12, A:G.165, A:E.326 Water bridges: A:E.326 SO4.4: 5 residues within 4Å: Chain B: G.10, T.11, S.12, G.164, G.165 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.11, B:T.11, B:S.12, B:G.165 Water bridges: B:L.13, B:E.326, B:E.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacik, J.P. et al., Molecular Basis of 1,6-Anhydro Bond Cleavage and Phosphoryl Transfer by Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase. J.Biol.Chem. (2011)

Release Date

2011-02-02

Peptides

Anhydro-N-acetylmuramic acid kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anhydro-N-acetylmuramic acid kinase

Related Entries With Identical Sequence