SMTL ID : 3qxy.1 (1 other biounit)

Human SETD6 in complex with RelA Lys310

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 16 residues within 4Å: Chain A: V.48, A.49, G.50, Y.51, A.198, Y.199, D.224, I.225, L.226, N.227, H.228, L.229, Y.261, Y.273, F.275 Ligands: EDO.8 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.51, A:Y.199, A:N.227, A:N.227, A:H.228, A:H.228, A:Y.261, A:Y.273 pi-Stacking: A:F.275, A:F.275 pi-Cation interactions: A:Y.199

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: L.126, G.127, R.128, L.129, F.134, Q.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.129, A:Q.191 EDO.3: 7 residues within 4Å: Chain A: S.96, W.98, L.102, N.159, I.160, E.163, V.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.96 Water bridges: A:N.159 EDO.4: 6 residues within 4Å: Chain A: L.400, Q.401, Y.403, A.404, T.405, D.406 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.404 Water bridges: A:L.400, A:D.406 EDO.5: 6 residues within 4Å: Chain A: T.344, E.372, E.373, G.374, S.375, L.384 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.372, A:N.380 EDO.6: 6 residues within 4Å: Chain A: V.276, P.278, Y.420, W.425, Q.428, Q.432 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.420, A:Q.428 EDO.7: 6 residues within 4Å: Chain A: L.26, C.29, R.30, L.34, E.35, L.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.30, A:L.34, A:L.36 EDO.8: 3 residues within 4Å: Chain A: L.229, V.276 Ligands: SAM.1 No protein-ligand interaction detected (PLIP) EDO.9: 2 residues within 4Å: Chain A: N.416, E.418 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.416, A:E.418, A:E.418 EDO.10: 5 residues within 4Å: Chain A: L.338, T.339, E.340, E.341, E.342 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.340, A:E.342 Water bridges: A:E.340, A:E.340 EDO.11: 1 residues within 4Å: Chain A: V.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.32 EDO.12: 4 residues within 4Å: Chain A: E.137, R.141, P.150, E.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.137, A:E.154 Water bridges: A:R.140, A:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, Y. et al., Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling. Nucleic Acids Res. (2011)

Release Date

2011-05-25

Peptides

N-lysine methyltransferase SETD6: A
Transcription factor p65: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
P

N-lysine methyltransferase SETD6

Transcription factor p65

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