SMTL ID : 3rc0.2 (1 other biounit)

Human SETD6 in complex with RelA Lys310 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: V.276, Y.420, W.425, Q.428, Q.429, Q.432 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.428 Water bridges: A:V.276 EDO.2: 5 residues within 4Å: Chain A: G.146, T.147, G.148, E.151, Q.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.146, A:G.148 Water bridges: A:E.151, A:E.151 EDO.3: 1 residues within 4Å: Chain A: N.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.231 Water bridges: A:H.232 EDO.4: 4 residues within 4Å: Chain A: V.48, A.49, W.425 Ligands: SAM.7 3 PLIP interactions: 3 interactions with chain A Water bridges: A:V.276, A:V.276, A:Q.429 EDO.5: 5 residues within 4Å: Chain A: S.96, W.98, N.159, I.160, E.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.96, A:S.96 EDO.6: 5 residues within 4Å: Chain A: E.130, W.135, W.425, R.426, Q.429 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.426, A:R.426, A:Q.429, A:Q.429

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.7: 16 residues within 4Å: Chain A: V.48, A.49, G.50, Y.51, A.198, Y.199, D.224, I.225, L.226, N.227, H.228, L.229, Y.261, Y.273, F.275 Ligands: EDO.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.51, A:Y.199, A:N.227, A:N.227, A:H.228, A:H.228, A:Y.261, A:Y.273 Water bridges: A:Y.199 pi-Stacking: A:F.275, A:F.275 pi-Cation interactions: A:Y.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, Y. et al., Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling. Nucleic Acids Res. (2011)

Release Date

2011-05-25

Peptides

N-lysine methyltransferase SETD6: A
Transcription factor p65 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
Q

N-lysine methyltransferase SETD6

Transcription factor p65 peptide

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