SMTL ID : 3r13.1

Crystal structure of a Deoxyribose-phosphate aldolase (TM_1559) from THERMOTOGA MARITIMA at 1.83 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x UNL: UNKNOWN LIGAND

UNL.1: 8 residues within 4Å: Chain A: D.129, K.191, S.193, T.194, S.222, G.223, G.243 Ligands: GOL.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.191 UNL.7: 8 residues within 4Å: Chain B: T.50, D.129, K.191, S.193, T.194, S.222, G.223 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.191

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: Y.25, R.26, Y.29 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.29 ACT.3: 2 residues within 4Å: Chain A: Y.169 Chain B: F.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.169 Salt bridges: A:K.138 ACT.4: 2 residues within 4Å: Chain A: K.24, I.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.212 Salt bridges: A:K.24 ACT.6: 3 residues within 4Å: Chain A: M.136 Chain B: P.58, C.81 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.58 ACT.8: 3 residues within 4Å: Chain B: V.22, R.26, E.173 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.173 Water bridges: B:T.172 Salt bridges: B:R.26 ACT.9: 3 residues within 4Å: Chain B: G.199, G.200, T.202 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.200

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: G.224, I.225, R.226, T.244, S.245, S.246 Ligands: UNL.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.224, A:R.226, A:S.245, A:S.245 Water bridges: A:G.223, A:G.243 GOL.10: 7 residues within 4Å: Chain B: G.224, I.225, R.226, T.244, S.245, S.246 Ligands: UNL.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.226, B:T.244, B:S.245, B:S.245, B:S.246 Water bridges: B:G.223, B:S.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Deoxyribose-phosphate aldolase (TM_1559) from THERMOTOGA MARITIMA at 1.83 A resolution. To be published

Release Date

2011-03-30

Peptides

Deoxyribose-phosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deoxyribose-phosphate aldolase

Related Entries With Identical Sequence