SMTL ID : 3r1x.1 (2 other biounits)

Crystal structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: A.188, A.189, A.192, Q.223 No protein-ligand interaction detected (PLIP) FMT.2: 6 residues within 4Å: Chain A: R.112, D.157, R.159, T.243, F.244 Ligands: GOL.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.112, A:R.159

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: T.185, A.187, E.226, S.260, R.261, Q.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.226, A:S.260, A:R.261 Water bridges: A:Q.264, A:Q.264 GOL.4: 6 residues within 4Å: Chain A: S.72, N.73, G.75, W.76, K.77, I.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.72, A:G.75 Water bridges: A:I.78 GOL.5: 7 residues within 4Å: Chain B: G.142, T.163, G.164, H.167, S.229, L.258, R.261 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.142, B:S.229 Water bridges: B:S.229, B:S.229 GOL.6: 7 residues within 4Å: Chain B: T.185, A.187, F.190, E.226, S.260, R.261, Q.264 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.226, B:S.260, B:Q.264 Water bridges: B:Q.264 GOL.7: 5 residues within 4Å: Chain B: E.122, G.142, T.143, H.144 Ligands: GOL.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.143, B:T.143, B:H.144, B:H.144 GOL.8: 5 residues within 4Å: Chain B: Q.183, E.184, T.185, E.226, R.261 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.225, B:R.261 Water bridges: B:E.226 GOL.9: 7 residues within 4Å: Chain B: A.188, A.189, A.192, A.218, L.219, P.220, Q.223 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.223, B:Q.223 GOL.10: 5 residues within 4Å: Chain B: Q.125, A.254, G.278, D.279 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.125, B:V.253, B:D.279 Water bridges: B:G.278 GOL.11: 8 residues within 4Å: Chain A: R.159, T.239, L.240, T.243 Chain B: N.200, P.205, Q.206 Ligands: FMT.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.206 GOL.12: 5 residues within 4Å: Chain B: L.149, D.157, R.159, T.243, F.244 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.157, B:R.159 Water bridges: B:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-04-13

Peptides

2-oxo-3-deoxygalactonate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-oxo-3-deoxygalactonate kinase

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