SMTL ID : 3r1x.2 (2 other biounits)

Crystal structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: A.188, A.192, L.219, P.220, Q.223, F.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.223, A:Q.223 GOL.3: 6 residues within 4Å: Chain B: T.185, A.187, E.226, S.260, R.261, Q.264 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.226, B:S.260, B:Q.264 Water bridges: B:Q.264 GOL.4: 7 residues within 4Å: Chain B: D.12, G.121, E.122, Q.125, F.282 Ligands: GOL.6, GOL.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.12, B:E.122 Water bridges: B:Q.125 GOL.5: 6 residues within 4Å: Chain B: G.142, T.163, G.164, H.167, S.229, L.258 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.142, B:S.229 Water bridges: B:G.142, B:S.229, B:S.229 GOL.6: 6 residues within 4Å: Chain B: E.122, G.142, T.143, H.144 Ligands: GOL.4, GOL.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.122, B:E.122, B:T.143, B:H.144 GOL.7: 5 residues within 4Å: Chain B: Q.183, E.184, T.185, E.226, R.261 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.184, B:R.261 Water bridges: B:S.225, B:E.226 GOL.8: 6 residues within 4Å: Chain B: Q.125, A.254, G.278, D.279 Ligands: GOL.4, GOL.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.125, B:D.279, B:D.279 Water bridges: B:Q.125, B:P.141, B:G.278

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain B: D.157, R.159, T.243, F.244 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.157, B:R.159 Water bridges: B:R.112 FMT.9: 5 residues within 4Å: Chain B: G.92, Q.93, Q.94, L.95, W.103 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.93, B:L.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-04-13

Peptides

2-oxo-3-deoxygalactonate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

2-oxo-3-deoxygalactonate kinase

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