SMTL ID : 3r2x.1

Crystal structure of the de novo designed binding protein HB36.3 in complex the the 1918 influenza virus hemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: N.68, E.70, E.90, N.91, C.94, A.139, R.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.225 NAG-NAG-BMA-MAN.3: 7 residues within 4Å: Chain D: N.68, E.70, E.90, N.91, C.94, A.139, R.225 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.225 NAG-NAG-BMA-MAN.5: 7 residues within 4Å: Chain G: N.68, E.70, E.90, N.91, C.94, A.139, R.225 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:R.225

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NAG.4: 1 residues within 4Å: Chain D: N.27 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.27 NAG.6: 1 residues within 4Å: Chain G: N.27 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fleishman, S.J. et al., Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science (2011)

Release Date

2011-05-11

Peptides

Hemagglutinin: ADG
Hemagglutinin: BEH
HB36.3, designed hemagglutinin binding protein: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
C

F
C

I
C

Hemagglutinin

Hemagglutinin

HB36.3, designed hemagglutinin binding protein

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