SMTL ID : 3r56.1

Human Cyclophilin D Complexed with a Fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.1: 5 residues within 4Å: Chain A: V.94, G.95, P.96, V.98, H.132 No protein-ligand interaction detected (PLIP)

1 x 6AI: 1H-indazol-6-amine(Non-covalent)

6AI.2: 9 residues within 4Å: Chain A: G.73, T.74, R.83, A.102, N.103, A.104, T.108, G.110, Q.112 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.112 Hydrogen bonds: A:T.74, A:R.83 Water bridges: A:Q.112, A:Q.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed-Belkacem, A. et al., Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities. Nat Commun (2016)

Release Date

2012-03-21

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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