SMTL ID : 3r5n.1

Crystal structure of PPARgammaLBD complexed with the agonist magnolol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MLO: 5,5'-di(prop-2-en-1-yl)biphenyl-2,2'-diol(Non-covalent)

MLO.1: 12 residues within 4Å: Chain A: L.52, F.61, G.81, C.82, R.85, V.136, L.137, I.138, S.139, M.145, M.161 Ligands: MLO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.52, A:F.61, A:F.61, A:V.136, A:I.138 Hydrogen bonds: A:S.139 MLO.2: 14 residues within 4Å: Chain A: A.75, I.78, F.79, C.82, R.85, S.86, I.123, Y.124, L.127, F.160, M.161, K.164, H.246 Ligands: MLO.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.78, A:F.79, A:F.79, A:R.85, A:Y.124, A:L.127, A:F.160, A:F.160 Hydrogen bonds: A:S.86, A:K.164 Water bridges: A:H.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Molecular determinants of magnolol targeting both RXR(alpha) and PPAR(gamma). Plos One (2011)

Release Date

2012-02-08

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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