SMTL ID : 3rav.1

Horse spleen apo-ferritin with bound Pentobarbital

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-24-mer

Ligands

144 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: D.80 Chain V: Q.82 Ligand excluded by PLIP CD.2: 3 residues within 4Å: Chain A: E.56, E.57, E.60 Ligand excluded by PLIP CD.3: 2 residues within 4Å: Chain A: E.53, E.56 Ligand excluded by PLIP CD.4: 5 residues within 4Å: Chain A: D.127 Chain E: D.127 Chain I: D.127 Ligands: CD.40, CD.76 Ligand excluded by PLIP CD.5: 5 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.41, CD.77 Ligand excluded by PLIP CD.8: 1 residues within 4Å: Chain A: E.11 Ligand excluded by PLIP CD.10: 2 residues within 4Å: Chain B: D.80 Chain W: Q.82 Ligand excluded by PLIP CD.11: 3 residues within 4Å: Chain B: E.56, E.57, E.60 Ligand excluded by PLIP CD.12: 2 residues within 4Å: Chain B: E.53, E.56 Ligand excluded by PLIP CD.13: 5 residues within 4Å: Chain B: D.127 Chain G: D.127 Chain L: D.127 Ligands: CD.58, CD.103 Ligand excluded by PLIP CD.14: 5 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.59, CD.104 Ligand excluded by PLIP CD.17: 1 residues within 4Å: Chain B: E.11 Ligand excluded by PLIP CD.19: 2 residues within 4Å: Chain C: D.80 Chain X: Q.82 Ligand excluded by PLIP CD.20: 3 residues within 4Å: Chain C: E.56, E.57, E.60 Ligand excluded by PLIP CD.21: 2 residues within 4Å: Chain C: E.53, E.56 Ligand excluded by PLIP CD.22: 5 residues within 4Å: Chain C: D.127 Chain H: D.127 Chain J: D.127 Ligands: CD.67, CD.85 Ligand excluded by PLIP CD.23: 5 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.68, CD.86 Ligand excluded by PLIP CD.26: 1 residues within 4Å: Chain C: E.11 Ligand excluded by PLIP CD.28: 2 residues within 4Å: Chain D: D.80 Chain U: Q.82 Ligand excluded by PLIP CD.29: 3 residues within 4Å: Chain D: E.56, E.57, E.60 Ligand excluded by PLIP CD.30: 2 residues within 4Å: Chain D: E.53, E.56 Ligand excluded by PLIP CD.31: 5 residues within 4Å: Chain D: D.127 Chain F: D.127 Chain K: D.127 Ligands: CD.49, CD.94 Ligand excluded by PLIP CD.32: 5 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.50, CD.95 Ligand excluded by PLIP CD.35: 1 residues within 4Å: Chain D: E.11 Ligand excluded by PLIP CD.37: 2 residues within 4Å: Chain E: D.80 Chain Q: Q.82 Ligand excluded by PLIP CD.38: 3 residues within 4Å: Chain E: E.56, E.57, E.60 Ligand excluded by PLIP CD.39: 2 residues within 4Å: Chain E: E.53, E.56 Ligand excluded by PLIP CD.40: 5 residues within 4Å: Chain A: D.127 Chain E: D.127 Chain I: D.127 Ligands: CD.4, CD.76 Ligand excluded by PLIP CD.41: 5 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.5, CD.77 Ligand excluded by PLIP CD.44: 1 residues within 4Å: Chain E: E.11 Ligand excluded by PLIP CD.46: 2 residues within 4Å: Chain F: D.80 Chain T: Q.82 Ligand excluded by PLIP CD.47: 3 residues within 4Å: Chain F: E.56, E.57, E.60 Ligand excluded by PLIP CD.48: 2 residues within 4Å: Chain F: E.53, E.56 Ligand excluded by PLIP CD.49: 5 residues within 4Å: Chain D: D.127 Chain F: D.127 Chain K: D.127 Ligands: CD.31, CD.94 Ligand excluded by PLIP CD.50: 5 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.32, CD.95 Ligand excluded by PLIP CD.53: 1 residues within 4Å: Chain F: E.11 Ligand excluded by PLIP CD.55: 2 residues within 4Å: Chain G: D.80 Chain S: Q.82 Ligand excluded by PLIP CD.56: 3 residues within 4Å: Chain G: E.56, E.57, E.60 Ligand excluded by PLIP CD.57: 2 residues within 4Å: Chain G: E.53, E.56 Ligand excluded by PLIP CD.58: 5 residues within 4Å: Chain B: D.127 Chain G: D.127 Chain L: D.127 Ligands: CD.13, CD.103 Ligand excluded by PLIP CD.59: 5 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.14, CD.104 Ligand excluded by PLIP CD.62: 1 residues within 4Å: Chain G: E.11 Ligand excluded by PLIP CD.64: 2 residues within 4Å: Chain H: D.80 Chain R: Q.82 Ligand excluded by PLIP CD.65: 3 residues within 4Å: Chain H: E.56, E.57, E.60 Ligand excluded by PLIP CD.66: 2 residues within 4Å: Chain H: E.53, E.56 Ligand excluded by PLIP CD.67: 5 residues within 4Å: Chain C: D.127 Chain H: D.127 Chain J: D.127 Ligands: CD.22, CD.85 Ligand excluded by PLIP CD.68: 5 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.23, CD.86 Ligand excluded by PLIP CD.71: 1 residues within 4Å: Chain H: E.11 Ligand excluded by PLIP CD.73: 2 residues within 4Å: Chain I: D.80 Chain P: Q.82 Ligand excluded by PLIP CD.74: 3 residues within 4Å: Chain I: E.56, E.57, E.60 Ligand excluded by PLIP CD.75: 2 residues within 4Å: Chain I: E.53, E.56 Ligand excluded by PLIP CD.76: 5 residues within 4Å: Chain A: D.127 Chain E: D.127 Chain I: D.127 Ligands: CD.4, CD.40 Ligand excluded by PLIP CD.77: 5 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.5, CD.41 Ligand excluded by PLIP CD.80: 1 residues within 4Å: Chain I: E.11 Ligand excluded by PLIP CD.82: 2 residues within 4Å: Chain J: D.80 Chain M: Q.82 Ligand excluded by PLIP CD.83: 3 residues within 4Å: Chain J: E.56, E.57, E.60 Ligand excluded by PLIP CD.84: 2 residues within 4Å: Chain J: E.53, E.56 Ligand excluded by PLIP CD.85: 5 residues within 4Å: Chain C: D.127 Chain H: D.127 Chain J: D.127 Ligands: CD.22, CD.67 Ligand excluded by PLIP CD.86: 5 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.23, CD.68 Ligand excluded by PLIP CD.89: 1 residues within 4Å: Chain J: E.11 Ligand excluded by PLIP CD.91: 2 residues within 4Å: Chain K: D.80 Chain N: Q.82 Ligand excluded by PLIP CD.92: 3 residues within 4Å: Chain K: E.56, E.57, E.60 Ligand excluded by PLIP CD.93: 2 residues within 4Å: Chain K: E.53, E.56 Ligand excluded by PLIP CD.94: 5 residues within 4Å: Chain D: D.127 Chain F: D.127 Chain K: D.127 Ligands: CD.31, CD.49 Ligand excluded by PLIP CD.95: 5 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.32, CD.50 Ligand excluded by PLIP CD.98: 1 residues within 4Å: Chain K: E.11 Ligand excluded by PLIP CD.100: 2 residues within 4Å: Chain L: D.80 Chain O: Q.82 Ligand excluded by PLIP CD.101: 3 residues within 4Å: Chain L: E.56, E.57, E.60 Ligand excluded by PLIP CD.102: 2 residues within 4Å: Chain L: E.53, E.56 Ligand excluded by PLIP CD.103: 5 residues within 4Å: Chain B: D.127 Chain G: D.127 Chain L: D.127 Ligands: CD.13, CD.58 Ligand excluded by PLIP CD.104: 5 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.14, CD.59 Ligand excluded by PLIP CD.107: 1 residues within 4Å: Chain L: E.11 Ligand excluded by PLIP CD.109: 2 residues within 4Å: Chain J: Q.82 Chain M: D.80 Ligand excluded by PLIP CD.110: 3 residues within 4Å: Chain M: E.56, E.57, E.60 Ligand excluded by PLIP CD.111: 2 residues within 4Å: Chain M: E.53, E.56 Ligand excluded by PLIP CD.112: 5 residues within 4Å: Chain M: D.127 Chain Q: D.127 Chain U: D.127 Ligands: CD.148, CD.184 Ligand excluded by PLIP CD.113: 5 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.149, CD.185 Ligand excluded by PLIP CD.116: 1 residues within 4Å: Chain M: E.11 Ligand excluded by PLIP CD.118: 2 residues within 4Å: Chain K: Q.82 Chain N: D.80 Ligand excluded by PLIP CD.119: 3 residues within 4Å: Chain N: E.56, E.57, E.60 Ligand excluded by PLIP CD.120: 2 residues within 4Å: Chain N: E.53, E.56 Ligand excluded by PLIP CD.121: 5 residues within 4Å: Chain N: D.127 Chain S: D.127 Chain X: D.127 Ligands: CD.166, CD.211 Ligand excluded by PLIP CD.122: 5 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.167, CD.212 Ligand excluded by PLIP CD.125: 1 residues within 4Å: Chain N: E.11 Ligand excluded by PLIP CD.127: 2 residues within 4Å: Chain L: Q.82 Chain O: D.80 Ligand excluded by PLIP CD.128: 3 residues within 4Å: Chain O: E.56, E.57, E.60 Ligand excluded by PLIP CD.129: 2 residues within 4Å: Chain O: E.53, E.56 Ligand excluded by PLIP CD.130: 5 residues within 4Å: Chain O: D.127 Chain T: D.127 Chain V: D.127 Ligands: CD.175, CD.193 Ligand excluded by PLIP CD.131: 5 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.176, CD.194 Ligand excluded by PLIP CD.134: 1 residues within 4Å: Chain O: E.11 Ligand excluded by PLIP CD.136: 2 residues within 4Å: Chain I: Q.82 Chain P: D.80 Ligand excluded by PLIP CD.137: 3 residues within 4Å: Chain P: E.56, E.57, E.60 Ligand excluded by PLIP CD.138: 2 residues within 4Å: Chain P: E.53, E.56 Ligand excluded by PLIP CD.139: 5 residues within 4Å: Chain P: D.127 Chain R: D.127 Chain W: D.127 Ligands: CD.157, CD.202 Ligand excluded by PLIP CD.140: 5 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.158, CD.203 Ligand excluded by PLIP CD.143: 1 residues within 4Å: Chain P: E.11 Ligand excluded by PLIP CD.145: 2 residues within 4Å: Chain E: Q.82 Chain Q: D.80 Ligand excluded by PLIP CD.146: 3 residues within 4Å: Chain Q: E.56, E.57, E.60 Ligand excluded by PLIP CD.147: 2 residues within 4Å: Chain Q: E.53, E.56 Ligand excluded by PLIP CD.148: 5 residues within 4Å: Chain M: D.127 Chain Q: D.127 Chain U: D.127 Ligands: CD.112, CD.184 Ligand excluded by PLIP CD.149: 5 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.113, CD.185 Ligand excluded by PLIP CD.152: 1 residues within 4Å: Chain Q: E.11 Ligand excluded by PLIP CD.154: 2 residues within 4Å: Chain H: Q.82 Chain R: D.80 Ligand excluded by PLIP CD.155: 3 residues within 4Å: Chain R: E.56, E.57, E.60 Ligand excluded by PLIP CD.156: 2 residues within 4Å: Chain R: E.53, E.56 Ligand excluded by PLIP CD.157: 5 residues within 4Å: Chain P: D.127 Chain R: D.127 Chain W: D.127 Ligands: CD.139, CD.202 Ligand excluded by PLIP CD.158: 5 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.140, CD.203 Ligand excluded by PLIP CD.161: 1 residues within 4Å: Chain R: E.11 Ligand excluded by PLIP CD.163: 2 residues within 4Å: Chain G: Q.82 Chain S: D.80 Ligand excluded by PLIP CD.164: 3 residues within 4Å: Chain S: E.56, E.57, E.60 Ligand excluded by PLIP CD.165: 2 residues within 4Å: Chain S: E.53, E.56 Ligand excluded by PLIP CD.166: 5 residues within 4Å: Chain N: D.127 Chain S: D.127 Chain X: D.127 Ligands: CD.121, CD.211 Ligand excluded by PLIP CD.167: 5 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.122, CD.212 Ligand excluded by PLIP CD.170: 1 residues within 4Å: Chain S: E.11 Ligand excluded by PLIP CD.172: 2 residues within 4Å: Chain F: Q.82 Chain T: D.80 Ligand excluded by PLIP CD.173: 3 residues within 4Å: Chain T: E.56, E.57, E.60 Ligand excluded by PLIP CD.174: 2 residues within 4Å: Chain T: E.53, E.56 Ligand excluded by PLIP CD.175: 5 residues within 4Å: Chain O: D.127 Chain T: D.127 Chain V: D.127 Ligands: CD.130, CD.193 Ligand excluded by PLIP CD.176: 5 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.131, CD.194 Ligand excluded by PLIP CD.179: 1 residues within 4Å: Chain T: E.11 Ligand excluded by PLIP CD.181: 2 residues within 4Å: Chain D: Q.82 Chain U: D.80 Ligand excluded by PLIP CD.182: 3 residues within 4Å: Chain U: E.56, E.57, E.60 Ligand excluded by PLIP CD.183: 2 residues within 4Å: Chain U: E.53, E.56 Ligand excluded by PLIP CD.184: 5 residues within 4Å: Chain M: D.127 Chain Q: D.127 Chain U: D.127 Ligands: CD.112, CD.148 Ligand excluded by PLIP CD.185: 5 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.113, CD.149 Ligand excluded by PLIP CD.188: 1 residues within 4Å: Chain U: E.11 Ligand excluded by PLIP CD.190: 2 residues within 4Å: Chain A: Q.82 Chain V: D.80 Ligand excluded by PLIP CD.191: 3 residues within 4Å: Chain V: E.56, E.57, E.60 Ligand excluded by PLIP CD.192: 2 residues within 4Å: Chain V: E.53, E.56 Ligand excluded by PLIP CD.193: 5 residues within 4Å: Chain O: D.127 Chain T: D.127 Chain V: D.127 Ligands: CD.130, CD.175 Ligand excluded by PLIP CD.194: 5 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.131, CD.176 Ligand excluded by PLIP CD.197: 1 residues within 4Å: Chain V: E.11 Ligand excluded by PLIP CD.199: 2 residues within 4Å: Chain B: Q.82 Chain W: D.80 Ligand excluded by PLIP CD.200: 3 residues within 4Å: Chain W: E.56, E.57, E.60 Ligand excluded by PLIP CD.201: 2 residues within 4Å: Chain W: E.53, E.56 Ligand excluded by PLIP CD.202: 5 residues within 4Å: Chain P: D.127 Chain R: D.127 Chain W: D.127 Ligands: CD.139, CD.157 Ligand excluded by PLIP CD.203: 5 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.140, CD.158 Ligand excluded by PLIP CD.206: 1 residues within 4Å: Chain W: E.11 Ligand excluded by PLIP CD.208: 2 residues within 4Å: Chain C: Q.82 Chain X: D.80 Ligand excluded by PLIP CD.209: 3 residues within 4Å: Chain X: E.56, E.57, E.60 Ligand excluded by PLIP CD.210: 2 residues within 4Å: Chain X: E.53, E.56 Ligand excluded by PLIP CD.211: 5 residues within 4Å: Chain N: D.127 Chain S: D.127 Chain X: D.127 Ligands: CD.121, CD.166 Ligand excluded by PLIP CD.212: 5 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.122, CD.167 Ligand excluded by PLIP CD.215: 1 residues within 4Å: Chain X: E.11 Ligand excluded by PLIP

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: K.143, D.146, H.147 Chain P: E.45 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: K.143, D.146, H.147 Chain O: E.45 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain C: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain C: K.143, D.146, H.147 Chain M: E.45 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain D: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain D: K.143, D.146, H.147 Chain N: E.45 Ligand excluded by PLIP SO4.42: 3 residues within 4Å: Chain E: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.43: 4 residues within 4Å: Chain E: K.143, D.146, H.147 Chain V: E.45 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain F: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain F: K.143, D.146, H.147 Chain U: E.45 Ligand excluded by PLIP SO4.60: 3 residues within 4Å: Chain G: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.61: 4 residues within 4Å: Chain G: K.143, D.146, H.147 Chain W: E.45 Ligand excluded by PLIP SO4.69: 3 residues within 4Å: Chain H: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.70: 4 residues within 4Å: Chain H: K.143, D.146, H.147 Chain X: E.45 Ligand excluded by PLIP SO4.78: 3 residues within 4Å: Chain I: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.79: 4 residues within 4Å: Chain I: K.143, D.146, H.147 Chain Q: E.45 Ligand excluded by PLIP SO4.87: 3 residues within 4Å: Chain J: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.88: 4 residues within 4Å: Chain J: K.143, D.146, H.147 Chain R: E.45 Ligand excluded by PLIP SO4.96: 3 residues within 4Å: Chain K: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.97: 4 residues within 4Å: Chain K: K.143, D.146, H.147 Chain T: E.45 Ligand excluded by PLIP SO4.105: 3 residues within 4Å: Chain L: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.106: 4 residues within 4Å: Chain L: K.143, D.146, H.147 Chain S: E.45 Ligand excluded by PLIP SO4.114: 3 residues within 4Å: Chain M: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.115: 4 residues within 4Å: Chain D: E.45 Chain M: K.143, D.146, H.147 Ligand excluded by PLIP SO4.123: 3 residues within 4Å: Chain N: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.124: 4 residues within 4Å: Chain C: E.45 Chain N: K.143, D.146, H.147 Ligand excluded by PLIP SO4.132: 3 residues within 4Å: Chain O: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.133: 4 residues within 4Å: Chain A: E.45 Chain O: K.143, D.146, H.147 Ligand excluded by PLIP SO4.141: 3 residues within 4Å: Chain P: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.142: 4 residues within 4Å: Chain B: E.45 Chain P: K.143, D.146, H.147 Ligand excluded by PLIP SO4.150: 3 residues within 4Å: Chain Q: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.151: 4 residues within 4Å: Chain J: E.45 Chain Q: K.143, D.146, H.147 Ligand excluded by PLIP SO4.159: 3 residues within 4Å: Chain R: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.160: 4 residues within 4Å: Chain I: E.45 Chain R: K.143, D.146, H.147 Ligand excluded by PLIP SO4.168: 3 residues within 4Å: Chain S: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.169: 4 residues within 4Å: Chain K: E.45 Chain S: K.143, D.146, H.147 Ligand excluded by PLIP SO4.177: 3 residues within 4Å: Chain T: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.178: 4 residues within 4Å: Chain L: E.45 Chain T: K.143, D.146, H.147 Ligand excluded by PLIP SO4.186: 3 residues within 4Å: Chain U: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.187: 4 residues within 4Å: Chain E: E.45 Chain U: K.143, D.146, H.147 Ligand excluded by PLIP SO4.195: 3 residues within 4Å: Chain V: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.196: 4 residues within 4Å: Chain F: E.45 Chain V: K.143, D.146, H.147 Ligand excluded by PLIP SO4.204: 3 residues within 4Å: Chain W: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.205: 4 residues within 4Å: Chain H: E.45 Chain W: K.143, D.146, H.147 Ligand excluded by PLIP SO4.213: 3 residues within 4Å: Chain X: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.214: 4 residues within 4Å: Chain G: E.45 Chain X: K.143, D.146, H.147 Ligand excluded by PLIP

24 x RAV: 5-ethyl-5-[(2S)-pentan-2-yl]pyrimidine-2,4,6(1H,3H,5H)-trione(Non-covalent)

RAV.9: 11 residues within 4Å: Chain A: L.24, S.27, Y.28, A.55, R.59, L.81 Chain V: L.24, S.27, R.59, L.81 Ligands: RAV.198 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain V Hydrophobic interactions: A:A.55, A:L.81, V:R.59, V:L.81 Hydrogen bonds: V:S.27, V:S.27 RAV.18: 11 residues within 4Å: Chain B: L.24, S.27, Y.28, A.55, R.59, L.81 Chain W: L.24, S.27, R.59, L.81 Ligands: RAV.207 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain W Hydrophobic interactions: B:A.55, B:L.81, W:R.59, W:L.81 Hydrogen bonds: W:S.27, W:S.27 RAV.27: 11 residues within 4Å: Chain C: L.24, S.27, Y.28, A.55, R.59, L.81 Chain X: L.24, S.27, R.59, L.81 Ligands: RAV.216 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain X Hydrophobic interactions: C:A.55, C:L.81, X:R.59, X:L.81 Hydrogen bonds: X:S.27, X:S.27 RAV.36: 11 residues within 4Å: Chain D: L.24, S.27, Y.28, A.55, R.59, L.81 Chain U: L.24, S.27, R.59, L.81 Ligands: RAV.189 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain U Hydrophobic interactions: D:A.55, D:L.81, U:R.59, U:L.81 Hydrogen bonds: U:S.27, U:S.27 RAV.45: 11 residues within 4Å: Chain E: L.24, S.27, Y.28, A.55, R.59, L.81 Chain Q: L.24, S.27, R.59, L.81 Ligands: RAV.153 6 PLIP interactions: 2 interactions with chain E, 4 interactions with chain Q Hydrophobic interactions: E:A.55, E:L.81, Q:R.59, Q:L.81 Hydrogen bonds: Q:S.27, Q:S.27 RAV.54: 11 residues within 4Å: Chain F: L.24, S.27, Y.28, A.55, R.59, L.81 Chain T: L.24, S.27, R.59, L.81 Ligands: RAV.180 6 PLIP interactions: 4 interactions with chain T, 2 interactions with chain F Hydrophobic interactions: T:R.59, T:L.81, F:A.55, F:L.81 Hydrogen bonds: T:S.27, T:S.27 RAV.63: 11 residues within 4Å: Chain G: L.24, S.27, Y.28, A.55, R.59, L.81 Chain S: L.24, S.27, R.59, L.81 Ligands: RAV.171 6 PLIP interactions: 2 interactions with chain G, 4 interactions with chain S Hydrophobic interactions: G:A.55, G:L.81, S:R.59, S:L.81 Hydrogen bonds: S:S.27, S:S.27 RAV.72: 11 residues within 4Å: Chain H: L.24, S.27, Y.28, A.55, R.59, L.81 Chain R: L.24, S.27, R.59, L.81 Ligands: RAV.162 6 PLIP interactions: 4 interactions with chain R, 2 interactions with chain H Hydrophobic interactions: R:R.59, R:L.81, H:A.55, H:L.81 Hydrogen bonds: R:S.27, R:S.27 RAV.81: 11 residues within 4Å: Chain I: L.24, S.27, Y.28, A.55, R.59, L.81 Chain P: L.24, S.27, R.59, L.81 Ligands: RAV.144 6 PLIP interactions: 4 interactions with chain P, 2 interactions with chain I Hydrophobic interactions: P:R.59, P:L.81, I:A.55, I:L.81 Hydrogen bonds: P:S.27, P:S.27 RAV.90: 11 residues within 4Å: Chain J: L.24, S.27, Y.28, A.55, R.59, L.81 Chain M: L.24, S.27, R.59, L.81 Ligands: RAV.117 5 PLIP interactions: 3 interactions with chain M, 2 interactions with chain J Hydrophobic interactions: M:R.59, M:L.81, J:A.55, J:L.81 Hydrogen bonds: M:S.27 RAV.99: 11 residues within 4Å: Chain K: L.24, S.27, Y.28, A.55, R.59, L.81 Chain N: L.24, S.27, R.59, L.81 Ligands: RAV.126 5 PLIP interactions: 2 interactions with chain K, 3 interactions with chain N Hydrophobic interactions: K:A.55, K:L.81, N:R.59, N:L.81 Hydrogen bonds: N:S.27 RAV.108: 11 residues within 4Å: Chain L: L.24, S.27, Y.28, A.55, R.59, L.81 Chain O: L.24, S.27, R.59, L.81 Ligands: RAV.135 5 PLIP interactions: 2 interactions with chain L, 3 interactions with chain O Hydrophobic interactions: L:A.55, L:L.81, O:R.59, O:L.81 Hydrogen bonds: O:S.27 RAV.117: 11 residues within 4Å: Chain J: L.24, S.27, R.59, L.81 Chain M: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.90 5 PLIP interactions: 3 interactions with chain J, 2 interactions with chain M Hydrophobic interactions: J:R.59, J:L.81, M:A.55, M:L.81 Hydrogen bonds: J:S.27 RAV.126: 11 residues within 4Å: Chain K: L.24, S.27, R.59, L.81 Chain N: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.99 5 PLIP interactions: 3 interactions with chain K, 2 interactions with chain N Hydrophobic interactions: K:R.59, K:L.81, N:A.55, N:L.81 Hydrogen bonds: K:S.27 RAV.135: 11 residues within 4Å: Chain L: L.24, S.27, R.59, L.81 Chain O: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.108 5 PLIP interactions: 3 interactions with chain L, 2 interactions with chain O Hydrophobic interactions: L:R.59, L:L.81, O:A.55, O:L.81 Hydrogen bonds: L:S.27 RAV.144: 11 residues within 4Å: Chain I: L.24, S.27, R.59, L.81 Chain P: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.81 6 PLIP interactions: 2 interactions with chain P, 4 interactions with chain I Hydrophobic interactions: P:A.55, P:L.81, I:R.59, I:L.81 Hydrogen bonds: I:S.27, I:S.27 RAV.153: 11 residues within 4Å: Chain E: L.24, S.27, R.59, L.81 Chain Q: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.45 6 PLIP interactions: 2 interactions with chain Q, 4 interactions with chain E Hydrophobic interactions: Q:A.55, Q:L.81, E:R.59, E:L.81 Hydrogen bonds: E:S.27, E:S.27 RAV.162: 11 residues within 4Å: Chain H: L.24, S.27, R.59, L.81 Chain R: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.72 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain R Hydrophobic interactions: H:R.59, H:L.81, R:A.55, R:L.81 Hydrogen bonds: H:S.27, H:S.27 RAV.171: 11 residues within 4Å: Chain G: L.24, S.27, R.59, L.81 Chain S: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.63 6 PLIP interactions: 2 interactions with chain S, 4 interactions with chain G Hydrophobic interactions: S:A.55, S:L.81, G:R.59, G:L.81 Hydrogen bonds: G:S.27, G:S.27 RAV.180: 11 residues within 4Å: Chain F: L.24, S.27, R.59, L.81 Chain T: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.54 6 PLIP interactions: 2 interactions with chain T, 4 interactions with chain F Hydrophobic interactions: T:A.55, T:L.81, F:R.59, F:L.81 Hydrogen bonds: F:S.27, F:S.27 RAV.189: 11 residues within 4Å: Chain D: L.24, S.27, R.59, L.81 Chain U: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.36 6 PLIP interactions: 2 interactions with chain U, 4 interactions with chain D Hydrophobic interactions: U:A.55, U:L.81, D:R.59, D:L.81 Hydrogen bonds: D:S.27, D:S.27 RAV.198: 11 residues within 4Å: Chain A: L.24, S.27, R.59, L.81 Chain V: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.9 6 PLIP interactions: 2 interactions with chain V, 4 interactions with chain A Hydrophobic interactions: V:A.55, V:L.81, A:R.59, A:L.81 Hydrogen bonds: A:S.27, A:S.27 RAV.207: 11 residues within 4Å: Chain B: L.24, S.27, R.59, L.81 Chain W: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.18 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain W Hydrophobic interactions: B:R.59, B:L.81, W:A.55, W:L.81 Hydrogen bonds: B:S.27, B:S.27 RAV.216: 11 residues within 4Å: Chain C: L.24, S.27, R.59, L.81 Chain X: L.24, S.27, Y.28, A.55, R.59, L.81 Ligands: RAV.27 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain X Hydrophobic interactions: C:R.59, C:L.81, X:A.55, X:L.81 Hydrogen bonds: C:S.27, C:S.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oakley, S.H. et al., High resolution view of barbiturate recognition by a protein binding site. to be published

Release Date

2011-05-11

Peptides

Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin light chain

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