SMTL ID : 3rco.1 (3 other biounits)

Crystal structure of a conserved motif in human TDRD7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-24-mer

Ligands

132 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: V.63, P.64, A.65 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: P.47, F.48, K.49, Q.50 Chain I: Q.50 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: K.49 Chain E: K.49 Chain I: K.49 Ligands: CL.37, CL.69 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: F.48, T.55, L.56 Ligands: CL.7 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: T.55, L.56, E.57 Ligands: CL.6 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: L.9, E.10, G.11 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: V.63, P.64, A.65 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain B: P.47, F.48, K.49, Q.50 Chain L: Q.50 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain B: K.49 Chain G: K.49 Chain L: K.49 Ligands: CL.53, CL.93 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain B: F.48, T.55, L.56 Ligands: CL.15 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain B: T.55, L.56, E.57 Ligands: CL.14 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: L.9, E.10, G.11 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain C: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain C: V.63, P.64, A.65 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain C: P.47, F.48, K.49, Q.50 Chain J: Q.50 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain C: K.49 Chain H: K.49 Chain J: K.49 Ligands: CL.61, CL.77 Ligand excluded by PLIP CL.22: 4 residues within 4Å: Chain C: F.48, T.55, L.56 Ligands: CL.23 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain C: T.55, L.56, E.57 Ligands: CL.22 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain C: L.9, E.10, G.11 Ligand excluded by PLIP CL.25: 4 residues within 4Å: Chain D: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain D: V.63, P.64, A.65 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain D: P.47, F.48, K.49, Q.50 Chain K: Q.50 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain D: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.29: 5 residues within 4Å: Chain D: K.49 Chain F: K.49 Chain K: K.49 Ligands: CL.45, CL.85 Ligand excluded by PLIP CL.30: 4 residues within 4Å: Chain D: F.48, T.55, L.56 Ligands: CL.31 Ligand excluded by PLIP CL.31: 4 residues within 4Å: Chain D: T.55, L.56, E.57 Ligands: CL.30 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain D: L.9, E.10, G.11 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain E: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.34: 3 residues within 4Å: Chain E: V.63, P.64, A.65 Ligand excluded by PLIP CL.35: 5 residues within 4Å: Chain A: Q.50 Chain E: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain E: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.37: 5 residues within 4Å: Chain A: K.49 Chain E: K.49 Chain I: K.49 Ligands: CL.5, CL.69 Ligand excluded by PLIP CL.38: 4 residues within 4Å: Chain E: F.48, T.55, L.56 Ligands: CL.39 Ligand excluded by PLIP CL.39: 4 residues within 4Å: Chain E: T.55, L.56, E.57 Ligands: CL.38 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain E: L.9, E.10, G.11 Ligand excluded by PLIP CL.41: 4 residues within 4Å: Chain F: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.42: 3 residues within 4Å: Chain F: V.63, P.64, A.65 Ligand excluded by PLIP CL.43: 5 residues within 4Å: Chain D: Q.50 Chain F: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.44: 4 residues within 4Å: Chain F: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.45: 5 residues within 4Å: Chain D: K.49 Chain F: K.49 Chain K: K.49 Ligands: CL.29, CL.85 Ligand excluded by PLIP CL.46: 4 residues within 4Å: Chain F: F.48, T.55, L.56 Ligands: CL.47 Ligand excluded by PLIP CL.47: 4 residues within 4Å: Chain F: T.55, L.56, E.57 Ligands: CL.46 Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain F: L.9, E.10, G.11 Ligand excluded by PLIP CL.49: 4 residues within 4Å: Chain G: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.50: 3 residues within 4Å: Chain G: V.63, P.64, A.65 Ligand excluded by PLIP CL.51: 5 residues within 4Å: Chain B: Q.50 Chain G: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.52: 4 residues within 4Å: Chain G: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.53: 5 residues within 4Å: Chain B: K.49 Chain G: K.49 Chain L: K.49 Ligands: CL.13, CL.93 Ligand excluded by PLIP CL.54: 4 residues within 4Å: Chain G: F.48, T.55, L.56 Ligands: CL.55 Ligand excluded by PLIP CL.55: 4 residues within 4Å: Chain G: T.55, L.56, E.57 Ligands: CL.54 Ligand excluded by PLIP CL.56: 3 residues within 4Å: Chain G: L.9, E.10, G.11 Ligand excluded by PLIP CL.57: 4 residues within 4Å: Chain H: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.58: 3 residues within 4Å: Chain H: V.63, P.64, A.65 Ligand excluded by PLIP CL.59: 5 residues within 4Å: Chain C: Q.50 Chain H: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.60: 4 residues within 4Å: Chain H: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.61: 5 residues within 4Å: Chain C: K.49 Chain H: K.49 Chain J: K.49 Ligands: CL.21, CL.77 Ligand excluded by PLIP CL.62: 4 residues within 4Å: Chain H: F.48, T.55, L.56 Ligands: CL.63 Ligand excluded by PLIP CL.63: 4 residues within 4Å: Chain H: T.55, L.56, E.57 Ligands: CL.62 Ligand excluded by PLIP CL.64: 3 residues within 4Å: Chain H: L.9, E.10, G.11 Ligand excluded by PLIP CL.65: 4 residues within 4Å: Chain I: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.66: 3 residues within 4Å: Chain I: V.63, P.64, A.65 Ligand excluded by PLIP CL.67: 5 residues within 4Å: Chain E: Q.50 Chain I: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.68: 4 residues within 4Å: Chain I: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.69: 5 residues within 4Å: Chain A: K.49 Chain E: K.49 Chain I: K.49 Ligands: CL.5, CL.37 Ligand excluded by PLIP CL.70: 4 residues within 4Å: Chain I: F.48, T.55, L.56 Ligands: CL.71 Ligand excluded by PLIP CL.71: 4 residues within 4Å: Chain I: T.55, L.56, E.57 Ligands: CL.70 Ligand excluded by PLIP CL.72: 3 residues within 4Å: Chain I: L.9, E.10, G.11 Ligand excluded by PLIP CL.73: 4 residues within 4Å: Chain J: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.74: 3 residues within 4Å: Chain J: V.63, P.64, A.65 Ligand excluded by PLIP CL.75: 5 residues within 4Å: Chain H: Q.50 Chain J: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.76: 4 residues within 4Å: Chain J: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.77: 5 residues within 4Å: Chain C: K.49 Chain H: K.49 Chain J: K.49 Ligands: CL.21, CL.61 Ligand excluded by PLIP CL.78: 4 residues within 4Å: Chain J: F.48, T.55, L.56 Ligands: CL.79 Ligand excluded by PLIP CL.79: 4 residues within 4Å: Chain J: T.55, L.56, E.57 Ligands: CL.78 Ligand excluded by PLIP CL.80: 3 residues within 4Å: Chain J: L.9, E.10, G.11 Ligand excluded by PLIP CL.81: 4 residues within 4Å: Chain K: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.82: 3 residues within 4Å: Chain K: V.63, P.64, A.65 Ligand excluded by PLIP CL.83: 5 residues within 4Å: Chain F: Q.50 Chain K: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.84: 4 residues within 4Å: Chain K: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.85: 5 residues within 4Å: Chain D: K.49 Chain F: K.49 Chain K: K.49 Ligands: CL.29, CL.45 Ligand excluded by PLIP CL.86: 4 residues within 4Å: Chain K: F.48, T.55, L.56 Ligands: CL.87 Ligand excluded by PLIP CL.87: 4 residues within 4Å: Chain K: T.55, L.56, E.57 Ligands: CL.86 Ligand excluded by PLIP CL.88: 3 residues within 4Å: Chain K: L.9, E.10, G.11 Ligand excluded by PLIP CL.89: 4 residues within 4Å: Chain L: L.31, P.32, E.76, I.77 Ligand excluded by PLIP CL.90: 3 residues within 4Å: Chain L: V.63, P.64, A.65 Ligand excluded by PLIP CL.91: 5 residues within 4Å: Chain G: Q.50 Chain L: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.92: 4 residues within 4Å: Chain L: G.28, V.29, A.30, R.33 Ligand excluded by PLIP CL.93: 5 residues within 4Å: Chain B: K.49 Chain G: K.49 Chain L: K.49 Ligands: CL.13, CL.53 Ligand excluded by PLIP CL.94: 4 residues within 4Å: Chain L: F.48, T.55, L.56 Ligands: CL.95 Ligand excluded by PLIP CL.95: 4 residues within 4Å: Chain L: T.55, L.56, E.57 Ligands: CL.94 Ligand excluded by PLIP CL.96: 3 residues within 4Å: Chain L: L.9, E.10, G.11 Ligand excluded by PLIP CL.97: 5 residues within 4Å: Chain M: P.47, F.48, K.49, Q.50 Chain Q: Q.50 Ligand excluded by PLIP CL.98: 4 residues within 4Å: Chain K: S.74 Chain M: T.55, L.56, E.57 Ligand excluded by PLIP CL.99: 4 residues within 4Å: Chain K: R.73 Chain M: P.32, E.76, I.77 Ligand excluded by PLIP CL.100: 5 residues within 4Å: Chain N: P.47, F.48, K.49, Q.50 Chain S: Q.50 Ligand excluded by PLIP CL.101: 4 residues within 4Å: Chain J: S.74 Chain N: T.55, L.56, E.57 Ligand excluded by PLIP CL.102: 4 residues within 4Å: Chain J: R.73 Chain N: P.32, E.76, I.77 Ligand excluded by PLIP CL.103: 5 residues within 4Å: Chain O: P.47, F.48, K.49, Q.50 Chain T: Q.50 Ligand excluded by PLIP CL.104: 4 residues within 4Å: Chain L: S.74 Chain O: T.55, L.56, E.57 Ligand excluded by PLIP CL.105: 4 residues within 4Å: Chain L: R.73 Chain O: P.32, E.76, I.77 Ligand excluded by PLIP CL.106: 5 residues within 4Å: Chain P: P.47, F.48, K.49, Q.50 Chain R: Q.50 Ligand excluded by PLIP CL.107: 4 residues within 4Å: Chain I: S.74 Chain P: T.55, L.56, E.57 Ligand excluded by PLIP CL.108: 4 residues within 4Å: Chain I: R.73 Chain P: P.32, E.76, I.77 Ligand excluded by PLIP CL.109: 5 residues within 4Å: Chain Q: P.47, F.48, K.49, Q.50 Chain U: Q.50 Ligand excluded by PLIP CL.110: 4 residues within 4Å: Chain C: S.74 Chain Q: T.55, L.56, E.57 Ligand excluded by PLIP CL.111: 4 residues within 4Å: Chain C: R.73 Chain Q: P.32, E.76, I.77 Ligand excluded by PLIP CL.112: 5 residues within 4Å: Chain R: P.47, F.48, K.49, Q.50 Chain W: Q.50 Ligand excluded by PLIP CL.113: 4 residues within 4Å: Chain B: S.74 Chain R: T.55, L.56, E.57 Ligand excluded by PLIP CL.114: 4 residues within 4Å: Chain B: R.73 Chain R: P.32, E.76, I.77 Ligand excluded by PLIP CL.115: 5 residues within 4Å: Chain S: P.47, F.48, K.49, Q.50 Chain X: Q.50 Ligand excluded by PLIP CL.116: 4 residues within 4Å: Chain D: S.74 Chain S: T.55, L.56, E.57 Ligand excluded by PLIP CL.117: 4 residues within 4Å: Chain D: R.73 Chain S: P.32, E.76, I.77 Ligand excluded by PLIP CL.118: 5 residues within 4Å: Chain T: P.47, F.48, K.49, Q.50 Chain V: Q.50 Ligand excluded by PLIP CL.119: 4 residues within 4Å: Chain A: S.74 Chain T: T.55, L.56, E.57 Ligand excluded by PLIP CL.120: 4 residues within 4Å: Chain A: R.73 Chain T: P.32, E.76, I.77 Ligand excluded by PLIP CL.121: 5 residues within 4Å: Chain M: Q.50 Chain U: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.122: 4 residues within 4Å: Chain G: S.74 Chain U: T.55, L.56, E.57 Ligand excluded by PLIP CL.123: 4 residues within 4Å: Chain G: R.73 Chain U: P.32, E.76, I.77 Ligand excluded by PLIP CL.124: 5 residues within 4Å: Chain O: Q.50 Chain V: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.125: 4 residues within 4Å: Chain F: S.74 Chain V: T.55, L.56, E.57 Ligand excluded by PLIP CL.126: 4 residues within 4Å: Chain F: R.73 Chain V: P.32, E.76, I.77 Ligand excluded by PLIP CL.127: 5 residues within 4Å: Chain P: Q.50 Chain W: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.128: 4 residues within 4Å: Chain H: S.74 Chain W: T.55, L.56, E.57 Ligand excluded by PLIP CL.129: 4 residues within 4Å: Chain H: R.73 Chain W: P.32, E.76, I.77 Ligand excluded by PLIP CL.130: 5 residues within 4Å: Chain N: Q.50 Chain X: P.47, F.48, K.49, Q.50 Ligand excluded by PLIP CL.131: 4 residues within 4Å: Chain E: S.74 Chain X: T.55, L.56, E.57 Ligand excluded by PLIP CL.132: 4 residues within 4Å: Chain E: R.73 Chain X: P.32, E.76, I.77 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Crystal structure of a conserved motif in human TDRD7. To be Published

Release Date

2012-04-04

Peptides

Tudor domain-containing protein 7: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

E
B

F
B

G
B

H
B

I
B

J
B

K
B

L
B

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Tudor domain-containing protein 7

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