- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x EDP: 5-ethyl-5-[(2R)-pentan-2-yl]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione(Non-covalent)
- 120 x CD: CADMIUM ION(Non-covalent)
CD.2: 2 residues within 4Å:- Chain A: D.80
- Chain V: Q.82
Ligand excluded by PLIPCD.3: 5 residues within 4Å:- Chain A: E.130
- Chain E: E.130
- Chain I: E.130
- Ligands: CD.35, CD.67
Ligand excluded by PLIPCD.4: 6 residues within 4Å:- Chain A: D.127
- Chain E: D.127
- Chain I: D.127, S.131
- Ligands: CD.36, CD.68
Ligand excluded by PLIPCD.5: 2 residues within 4Å:- Chain A: E.53, E.56
Ligand excluded by PLIPCD.6: 3 residues within 4Å:- Chain A: E.56, E.57, E.60
Ligand excluded by PLIPCD.10: 2 residues within 4Å:- Chain B: D.80
- Chain W: Q.82
Ligand excluded by PLIPCD.11: 5 residues within 4Å:- Chain B: E.130
- Chain G: E.130
- Chain L: E.130
- Ligands: CD.51, CD.91
Ligand excluded by PLIPCD.12: 6 residues within 4Å:- Chain B: D.127
- Chain G: D.127
- Chain L: D.127, S.131
- Ligands: CD.52, CD.92
Ligand excluded by PLIPCD.13: 2 residues within 4Å:- Chain B: E.53, E.56
Ligand excluded by PLIPCD.14: 3 residues within 4Å:- Chain B: E.56, E.57, E.60
Ligand excluded by PLIPCD.18: 2 residues within 4Å:- Chain C: D.80
- Chain X: Q.82
Ligand excluded by PLIPCD.19: 5 residues within 4Å:- Chain C: E.130
- Chain H: E.130
- Chain J: E.130
- Ligands: CD.59, CD.75
Ligand excluded by PLIPCD.20: 6 residues within 4Å:- Chain C: D.127
- Chain H: D.127
- Chain J: D.127, S.131
- Ligands: CD.60, CD.76
Ligand excluded by PLIPCD.21: 2 residues within 4Å:- Chain C: E.53, E.56
Ligand excluded by PLIPCD.22: 3 residues within 4Å:- Chain C: E.56, E.57, E.60
Ligand excluded by PLIPCD.26: 2 residues within 4Å:- Chain D: D.80
- Chain U: Q.82
Ligand excluded by PLIPCD.27: 5 residues within 4Å:- Chain D: E.130
- Chain F: E.130
- Chain K: E.130
- Ligands: CD.43, CD.83
Ligand excluded by PLIPCD.28: 6 residues within 4Å:- Chain D: D.127
- Chain F: D.127
- Chain K: D.127, S.131
- Ligands: CD.44, CD.84
Ligand excluded by PLIPCD.29: 2 residues within 4Å:- Chain D: E.53, E.56
Ligand excluded by PLIPCD.30: 3 residues within 4Å:- Chain D: E.56, E.57, E.60
Ligand excluded by PLIPCD.34: 2 residues within 4Å:- Chain E: D.80
- Chain Q: Q.82
Ligand excluded by PLIPCD.35: 5 residues within 4Å:- Chain A: E.130
- Chain E: E.130
- Chain I: E.130
- Ligands: CD.3, CD.67
Ligand excluded by PLIPCD.36: 6 residues within 4Å:- Chain A: D.127, S.131
- Chain E: D.127
- Chain I: D.127
- Ligands: CD.4, CD.68
Ligand excluded by PLIPCD.37: 2 residues within 4Å:- Chain E: E.53, E.56
Ligand excluded by PLIPCD.38: 3 residues within 4Å:- Chain E: E.56, E.57, E.60
Ligand excluded by PLIPCD.42: 2 residues within 4Å:- Chain F: D.80
- Chain T: Q.82
Ligand excluded by PLIPCD.43: 5 residues within 4Å:- Chain D: E.130
- Chain F: E.130
- Chain K: E.130
- Ligands: CD.27, CD.83
Ligand excluded by PLIPCD.44: 6 residues within 4Å:- Chain D: D.127, S.131
- Chain F: D.127
- Chain K: D.127
- Ligands: CD.28, CD.84
Ligand excluded by PLIPCD.45: 2 residues within 4Å:- Chain F: E.53, E.56
Ligand excluded by PLIPCD.46: 3 residues within 4Å:- Chain F: E.56, E.57, E.60
Ligand excluded by PLIPCD.50: 2 residues within 4Å:- Chain G: D.80
- Chain S: Q.82
Ligand excluded by PLIPCD.51: 5 residues within 4Å:- Chain B: E.130
- Chain G: E.130
- Chain L: E.130
- Ligands: CD.11, CD.91
Ligand excluded by PLIPCD.52: 6 residues within 4Å:- Chain B: D.127, S.131
- Chain G: D.127
- Chain L: D.127
- Ligands: CD.12, CD.92
Ligand excluded by PLIPCD.53: 2 residues within 4Å:- Chain G: E.53, E.56
Ligand excluded by PLIPCD.54: 3 residues within 4Å:- Chain G: E.56, E.57, E.60
Ligand excluded by PLIPCD.58: 2 residues within 4Å:- Chain H: D.80
- Chain R: Q.82
Ligand excluded by PLIPCD.59: 5 residues within 4Å:- Chain C: E.130
- Chain H: E.130
- Chain J: E.130
- Ligands: CD.19, CD.75
Ligand excluded by PLIPCD.60: 6 residues within 4Å:- Chain C: D.127, S.131
- Chain H: D.127
- Chain J: D.127
- Ligands: CD.20, CD.76
Ligand excluded by PLIPCD.61: 2 residues within 4Å:- Chain H: E.53, E.56
Ligand excluded by PLIPCD.62: 3 residues within 4Å:- Chain H: E.56, E.57, E.60
Ligand excluded by PLIPCD.66: 2 residues within 4Å:- Chain I: D.80
- Chain P: Q.82
Ligand excluded by PLIPCD.67: 5 residues within 4Å:- Chain A: E.130
- Chain E: E.130
- Chain I: E.130
- Ligands: CD.3, CD.35
Ligand excluded by PLIPCD.68: 6 residues within 4Å:- Chain A: D.127
- Chain E: D.127, S.131
- Chain I: D.127
- Ligands: CD.4, CD.36
Ligand excluded by PLIPCD.69: 2 residues within 4Å:- Chain I: E.53, E.56
Ligand excluded by PLIPCD.70: 3 residues within 4Å:- Chain I: E.56, E.57, E.60
Ligand excluded by PLIPCD.74: 2 residues within 4Å:- Chain J: D.80
- Chain M: Q.82
Ligand excluded by PLIPCD.75: 5 residues within 4Å:- Chain C: E.130
- Chain H: E.130
- Chain J: E.130
- Ligands: CD.19, CD.59
Ligand excluded by PLIPCD.76: 6 residues within 4Å:- Chain C: D.127
- Chain H: D.127, S.131
- Chain J: D.127
- Ligands: CD.20, CD.60
Ligand excluded by PLIPCD.77: 2 residues within 4Å:- Chain J: E.53, E.56
Ligand excluded by PLIPCD.78: 3 residues within 4Å:- Chain J: E.56, E.57, E.60
Ligand excluded by PLIPCD.82: 2 residues within 4Å:- Chain K: D.80
- Chain N: Q.82
Ligand excluded by PLIPCD.83: 5 residues within 4Å:- Chain D: E.130
- Chain F: E.130
- Chain K: E.130
- Ligands: CD.27, CD.43
Ligand excluded by PLIPCD.84: 6 residues within 4Å:- Chain D: D.127
- Chain F: D.127, S.131
- Chain K: D.127
- Ligands: CD.28, CD.44
Ligand excluded by PLIPCD.85: 2 residues within 4Å:- Chain K: E.53, E.56
Ligand excluded by PLIPCD.86: 3 residues within 4Å:- Chain K: E.56, E.57, E.60
Ligand excluded by PLIPCD.90: 2 residues within 4Å:- Chain L: D.80
- Chain O: Q.82
Ligand excluded by PLIPCD.91: 5 residues within 4Å:- Chain B: E.130
- Chain G: E.130
- Chain L: E.130
- Ligands: CD.11, CD.51
Ligand excluded by PLIPCD.92: 6 residues within 4Å:- Chain B: D.127
- Chain G: D.127, S.131
- Chain L: D.127
- Ligands: CD.12, CD.52
Ligand excluded by PLIPCD.93: 2 residues within 4Å:- Chain L: E.53, E.56
Ligand excluded by PLIPCD.94: 3 residues within 4Å:- Chain L: E.56, E.57, E.60
Ligand excluded by PLIPCD.98: 2 residues within 4Å:- Chain J: Q.82
- Chain M: D.80
Ligand excluded by PLIPCD.99: 5 residues within 4Å:- Chain M: E.130
- Chain Q: E.130
- Chain U: E.130
- Ligands: CD.131, CD.163
Ligand excluded by PLIPCD.100: 6 residues within 4Å:- Chain M: D.127
- Chain Q: D.127
- Chain U: D.127, S.131
- Ligands: CD.132, CD.164
Ligand excluded by PLIPCD.101: 2 residues within 4Å:- Chain M: E.53, E.56
Ligand excluded by PLIPCD.102: 3 residues within 4Å:- Chain M: E.56, E.57, E.60
Ligand excluded by PLIPCD.106: 2 residues within 4Å:- Chain K: Q.82
- Chain N: D.80
Ligand excluded by PLIPCD.107: 5 residues within 4Å:- Chain N: E.130
- Chain S: E.130
- Chain X: E.130
- Ligands: CD.147, CD.187
Ligand excluded by PLIPCD.108: 6 residues within 4Å:- Chain N: D.127
- Chain S: D.127
- Chain X: D.127, S.131
- Ligands: CD.148, CD.188
Ligand excluded by PLIPCD.109: 2 residues within 4Å:- Chain N: E.53, E.56
Ligand excluded by PLIPCD.110: 3 residues within 4Å:- Chain N: E.56, E.57, E.60
Ligand excluded by PLIPCD.114: 2 residues within 4Å:- Chain L: Q.82
- Chain O: D.80
Ligand excluded by PLIPCD.115: 5 residues within 4Å:- Chain O: E.130
- Chain T: E.130
- Chain V: E.130
- Ligands: CD.155, CD.171
Ligand excluded by PLIPCD.116: 6 residues within 4Å:- Chain O: D.127
- Chain T: D.127
- Chain V: D.127, S.131
- Ligands: CD.156, CD.172
Ligand excluded by PLIPCD.117: 2 residues within 4Å:- Chain O: E.53, E.56
Ligand excluded by PLIPCD.118: 3 residues within 4Å:- Chain O: E.56, E.57, E.60
Ligand excluded by PLIPCD.122: 2 residues within 4Å:- Chain I: Q.82
- Chain P: D.80
Ligand excluded by PLIPCD.123: 5 residues within 4Å:- Chain P: E.130
- Chain R: E.130
- Chain W: E.130
- Ligands: CD.139, CD.179
Ligand excluded by PLIPCD.124: 6 residues within 4Å:- Chain P: D.127
- Chain R: D.127
- Chain W: D.127, S.131
- Ligands: CD.140, CD.180
Ligand excluded by PLIPCD.125: 2 residues within 4Å:- Chain P: E.53, E.56
Ligand excluded by PLIPCD.126: 3 residues within 4Å:- Chain P: E.56, E.57, E.60
Ligand excluded by PLIPCD.130: 2 residues within 4Å:- Chain E: Q.82
- Chain Q: D.80
Ligand excluded by PLIPCD.131: 5 residues within 4Å:- Chain M: E.130
- Chain Q: E.130
- Chain U: E.130
- Ligands: CD.99, CD.163
Ligand excluded by PLIPCD.132: 6 residues within 4Å:- Chain M: D.127, S.131
- Chain Q: D.127
- Chain U: D.127
- Ligands: CD.100, CD.164
Ligand excluded by PLIPCD.133: 2 residues within 4Å:- Chain Q: E.53, E.56
Ligand excluded by PLIPCD.134: 3 residues within 4Å:- Chain Q: E.56, E.57, E.60
Ligand excluded by PLIPCD.138: 2 residues within 4Å:- Chain H: Q.82
- Chain R: D.80
Ligand excluded by PLIPCD.139: 5 residues within 4Å:- Chain P: E.130
- Chain R: E.130
- Chain W: E.130
- Ligands: CD.123, CD.179
Ligand excluded by PLIPCD.140: 6 residues within 4Å:- Chain P: D.127, S.131
- Chain R: D.127
- Chain W: D.127
- Ligands: CD.124, CD.180
Ligand excluded by PLIPCD.141: 2 residues within 4Å:- Chain R: E.53, E.56
Ligand excluded by PLIPCD.142: 3 residues within 4Å:- Chain R: E.56, E.57, E.60
Ligand excluded by PLIPCD.146: 2 residues within 4Å:- Chain G: Q.82
- Chain S: D.80
Ligand excluded by PLIPCD.147: 5 residues within 4Å:- Chain N: E.130
- Chain S: E.130
- Chain X: E.130
- Ligands: CD.107, CD.187
Ligand excluded by PLIPCD.148: 6 residues within 4Å:- Chain N: D.127, S.131
- Chain S: D.127
- Chain X: D.127
- Ligands: CD.108, CD.188
Ligand excluded by PLIPCD.149: 2 residues within 4Å:- Chain S: E.53, E.56
Ligand excluded by PLIPCD.150: 3 residues within 4Å:- Chain S: E.56, E.57, E.60
Ligand excluded by PLIPCD.154: 2 residues within 4Å:- Chain F: Q.82
- Chain T: D.80
Ligand excluded by PLIPCD.155: 5 residues within 4Å:- Chain O: E.130
- Chain T: E.130
- Chain V: E.130
- Ligands: CD.115, CD.171
Ligand excluded by PLIPCD.156: 6 residues within 4Å:- Chain O: D.127, S.131
- Chain T: D.127
- Chain V: D.127
- Ligands: CD.116, CD.172
Ligand excluded by PLIPCD.157: 2 residues within 4Å:- Chain T: E.53, E.56
Ligand excluded by PLIPCD.158: 3 residues within 4Å:- Chain T: E.56, E.57, E.60
Ligand excluded by PLIPCD.162: 2 residues within 4Å:- Chain D: Q.82
- Chain U: D.80
Ligand excluded by PLIPCD.163: 5 residues within 4Å:- Chain M: E.130
- Chain Q: E.130
- Chain U: E.130
- Ligands: CD.99, CD.131
Ligand excluded by PLIPCD.164: 6 residues within 4Å:- Chain M: D.127
- Chain Q: D.127, S.131
- Chain U: D.127
- Ligands: CD.100, CD.132
Ligand excluded by PLIPCD.165: 2 residues within 4Å:- Chain U: E.53, E.56
Ligand excluded by PLIPCD.166: 3 residues within 4Å:- Chain U: E.56, E.57, E.60
Ligand excluded by PLIPCD.170: 2 residues within 4Å:- Chain A: Q.82
- Chain V: D.80
Ligand excluded by PLIPCD.171: 5 residues within 4Å:- Chain O: E.130
- Chain T: E.130
- Chain V: E.130
- Ligands: CD.115, CD.155
Ligand excluded by PLIPCD.172: 6 residues within 4Å:- Chain O: D.127
- Chain T: D.127, S.131
- Chain V: D.127
- Ligands: CD.116, CD.156
Ligand excluded by PLIPCD.173: 2 residues within 4Å:- Chain V: E.53, E.56
Ligand excluded by PLIPCD.174: 3 residues within 4Å:- Chain V: E.56, E.57, E.60
Ligand excluded by PLIPCD.178: 2 residues within 4Å:- Chain B: Q.82
- Chain W: D.80
Ligand excluded by PLIPCD.179: 5 residues within 4Å:- Chain P: E.130
- Chain R: E.130
- Chain W: E.130
- Ligands: CD.123, CD.139
Ligand excluded by PLIPCD.180: 6 residues within 4Å:- Chain P: D.127
- Chain R: D.127, S.131
- Chain W: D.127
- Ligands: CD.124, CD.140
Ligand excluded by PLIPCD.181: 2 residues within 4Å:- Chain W: E.53, E.56
Ligand excluded by PLIPCD.182: 3 residues within 4Å:- Chain W: E.56, E.57, E.60
Ligand excluded by PLIPCD.186: 2 residues within 4Å:- Chain C: Q.82
- Chain X: D.80
Ligand excluded by PLIPCD.187: 5 residues within 4Å:- Chain N: E.130
- Chain S: E.130
- Chain X: E.130
- Ligands: CD.107, CD.147
Ligand excluded by PLIPCD.188: 6 residues within 4Å:- Chain N: D.127
- Chain S: D.127, S.131
- Chain X: D.127
- Ligands: CD.108, CD.148
Ligand excluded by PLIPCD.189: 2 residues within 4Å:- Chain X: E.53, E.56
Ligand excluded by PLIPCD.190: 3 residues within 4Å:- Chain X: E.56, E.57, E.60
Ligand excluded by PLIP- 48 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 2 residues within 4Å:- Chain A: Q.6, N.7
Ligand excluded by PLIPSO4.8: 3 residues within 4Å:- Chain A: K.143, D.146, H.147
Ligand excluded by PLIPSO4.15: 2 residues within 4Å:- Chain B: Q.6, N.7
Ligand excluded by PLIPSO4.16: 3 residues within 4Å:- Chain B: K.143, D.146, H.147
Ligand excluded by PLIPSO4.23: 2 residues within 4Å:- Chain C: Q.6, N.7
Ligand excluded by PLIPSO4.24: 3 residues within 4Å:- Chain C: K.143, D.146, H.147
Ligand excluded by PLIPSO4.31: 2 residues within 4Å:- Chain D: Q.6, N.7
Ligand excluded by PLIPSO4.32: 3 residues within 4Å:- Chain D: K.143, D.146, H.147
Ligand excluded by PLIPSO4.39: 2 residues within 4Å:- Chain E: Q.6, N.7
Ligand excluded by PLIPSO4.40: 3 residues within 4Å:- Chain E: K.143, D.146, H.147
Ligand excluded by PLIPSO4.47: 2 residues within 4Å:- Chain F: Q.6, N.7
Ligand excluded by PLIPSO4.48: 3 residues within 4Å:- Chain F: K.143, D.146, H.147
Ligand excluded by PLIPSO4.55: 2 residues within 4Å:- Chain G: Q.6, N.7
Ligand excluded by PLIPSO4.56: 3 residues within 4Å:- Chain G: K.143, D.146, H.147
Ligand excluded by PLIPSO4.63: 2 residues within 4Å:- Chain H: Q.6, N.7
Ligand excluded by PLIPSO4.64: 3 residues within 4Å:- Chain H: K.143, D.146, H.147
Ligand excluded by PLIPSO4.71: 2 residues within 4Å:- Chain I: Q.6, N.7
Ligand excluded by PLIPSO4.72: 3 residues within 4Å:- Chain I: K.143, D.146, H.147
Ligand excluded by PLIPSO4.79: 2 residues within 4Å:- Chain J: Q.6, N.7
Ligand excluded by PLIPSO4.80: 3 residues within 4Å:- Chain J: K.143, D.146, H.147
Ligand excluded by PLIPSO4.87: 2 residues within 4Å:- Chain K: Q.6, N.7
Ligand excluded by PLIPSO4.88: 3 residues within 4Å:- Chain K: K.143, D.146, H.147
Ligand excluded by PLIPSO4.95: 2 residues within 4Å:- Chain L: Q.6, N.7
Ligand excluded by PLIPSO4.96: 3 residues within 4Å:- Chain L: K.143, D.146, H.147
Ligand excluded by PLIPSO4.103: 2 residues within 4Å:- Chain M: Q.6, N.7
Ligand excluded by PLIPSO4.104: 3 residues within 4Å:- Chain M: K.143, D.146, H.147
Ligand excluded by PLIPSO4.111: 2 residues within 4Å:- Chain N: Q.6, N.7
Ligand excluded by PLIPSO4.112: 3 residues within 4Å:- Chain N: K.143, D.146, H.147
Ligand excluded by PLIPSO4.119: 2 residues within 4Å:- Chain O: Q.6, N.7
Ligand excluded by PLIPSO4.120: 3 residues within 4Å:- Chain O: K.143, D.146, H.147
Ligand excluded by PLIPSO4.127: 2 residues within 4Å:- Chain P: Q.6, N.7
Ligand excluded by PLIPSO4.128: 3 residues within 4Å:- Chain P: K.143, D.146, H.147
Ligand excluded by PLIPSO4.135: 2 residues within 4Å:- Chain Q: Q.6, N.7
Ligand excluded by PLIPSO4.136: 3 residues within 4Å:- Chain Q: K.143, D.146, H.147
Ligand excluded by PLIPSO4.143: 2 residues within 4Å:- Chain R: Q.6, N.7
Ligand excluded by PLIPSO4.144: 3 residues within 4Å:- Chain R: K.143, D.146, H.147
Ligand excluded by PLIPSO4.151: 2 residues within 4Å:- Chain S: Q.6, N.7
Ligand excluded by PLIPSO4.152: 3 residues within 4Å:- Chain S: K.143, D.146, H.147
Ligand excluded by PLIPSO4.159: 2 residues within 4Å:- Chain T: Q.6, N.7
Ligand excluded by PLIPSO4.160: 3 residues within 4Å:- Chain T: K.143, D.146, H.147
Ligand excluded by PLIPSO4.167: 2 residues within 4Å:- Chain U: Q.6, N.7
Ligand excluded by PLIPSO4.168: 3 residues within 4Å:- Chain U: K.143, D.146, H.147
Ligand excluded by PLIPSO4.175: 2 residues within 4Å:- Chain V: Q.6, N.7
Ligand excluded by PLIPSO4.176: 3 residues within 4Å:- Chain V: K.143, D.146, H.147
Ligand excluded by PLIPSO4.183: 2 residues within 4Å:- Chain W: Q.6, N.7
Ligand excluded by PLIPSO4.184: 3 residues within 4Å:- Chain W: K.143, D.146, H.147
Ligand excluded by PLIPSO4.191: 2 residues within 4Å:- Chain X: Q.6, N.7
Ligand excluded by PLIPSO4.192: 3 residues within 4Å:- Chain X: K.143, D.146, H.147
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oakley, S.H. et al., High resolution view of barbiturate recognition by a protein binding site. to be published
- Release Date
- 2011-05-11
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x EDP: 5-ethyl-5-[(2R)-pentan-2-yl]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione(Non-covalent)
- 120 x CD: CADMIUM ION(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oakley, S.H. et al., High resolution view of barbiturate recognition by a protein binding site. to be published
- Release Date
- 2011-05-11
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A