SMTL ID : 3rdb.1

Human Cyclophilin D Complexed with a Fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.1: 5 residues within 4Å: Chain A: V.94, G.95, P.96, V.98, H.132 No protein-ligand interaction detected (PLIP)

1 x 5MZ: 3-[5-(chloromethyl)-1,2,4-oxadiazol-3-yl]aniline(Non-covalent)

5MZ.2: 9 residues within 4Å: Chain A: G.73, T.74, R.83, A.102, N.103, A.104, T.108, G.110, Q.112 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.104 Hydrogen bonds: A:R.83, A:R.83, A:G.110 Water bridges: A:Q.112, A:Q.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed-Belkacem, A. et al., Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities. Nat Commun (2016)

Release Date

2012-03-21

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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