SMTL ID : 3rdc.1

Human Cyclophilin D Complexed with an Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x EA4: ethyl N-[(4-aminobenzyl)carbamoyl]glycinate(Non-covalent)

EA4.1: 14 residues within 4Å: Chain A: R.56, F.61, Q.64, G.73, T.74, R.83, A.102, N.103, T.108, G.110, Q.112, F.114, L.123, H.127 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.61, A:A.102, A:Q.112, A:F.114, A:L.123 Hydrogen bonds: A:Q.64, A:R.83, A:N.103, A:N.103, A:N.103, A:G.110 Water bridges: A:Q.112, A:Q.112 Salt bridges: A:R.56, A:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., Combining 'dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography. Acta Crystallogr.,Sect.D (2015)

Release Date

2012-03-21

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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