SMTL ID : 3rez.3 (3 other biounits)

glycoprotein GPIb variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x FUL: beta-L-fucopyranose(Non-covalent)

FUL.1: 2 residues within 4Å: Chain A: D.110 Ligands: NAG.2 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: A.114 Ligands: FUL.1, MAN.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.114 Water bridges: A:D.110 NAG.4: 1 residues within 4Å: Chain A: N.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.41 Water bridges: A:N.41

1 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.3: 1 residues within 4Å: Ligands: NAG.2 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 1 residues within 4Å: Chain A: R.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.100 PEG.6: 3 residues within 4Å: Chain A: H.60, P.87, Y.88 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.59, A:L.61, A:G.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McEwan, P.A. et al., Quaternary organization of GPIb-IX complex and insights into Bernard-Soulier syndrome revealed by the structures of GPIb beta and a GPIb beta/GPIX chimera. Blood (2011)

Release Date

2012-02-15

Peptides

Platelet glycoprotein Ib beta chain, Platelet glycoprotein IX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Platelet glycoprotein Ib beta chain, Platelet glycoprotein IX

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