SMTL ID : 3rf1.1

The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC 11168

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 5 residues within 4Å: Chain A: R.82, N.93, R.94, L.95, Y.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.82, A:L.95 LMR.3: 3 residues within 4Å: Chain B: N.93, Y.98, R.187 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.95, B:R.187 Salt bridges: B:R.187, B:R.187

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.81, P.83, F.224, Y.227, N.228, H.269, L.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.81, A:N.228, A:N.228 Water bridges: A:H.269 GOL.4: 6 residues within 4Å: Chain B: G.68, K.69, K.70, K.304, L.307, N.308 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.69, B:K.70, B:K.304, B:L.307 GOL.5: 10 residues within 4Å: Chain A: P.48, Y.49, D.50 Chain B: P.48, Y.49, M.51, A.53, H.59, A.78, P.79 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.49, B:A.53, A:P.48 GOL.6: 6 residues within 4Å: Chain A: Q.240, N.243 Chain B: I.236, Q.240, N.243, S.244 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.243, A:Q.240, A:N.243 GOL.7: 3 residues within 4Å: Chain B: F.58, W.139, S.141 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC 11168. To be Published

Release Date

2011-04-20

Peptides

Glycyl-tRNA synthetase alpha subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycyl-tRNA synthetase alpha subunit

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