SMTL ID : 3rgl.1

The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP and glycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 9 residues within 4Å: Chain A: A.55, G.56, T.57, R.82, Q.100, Q.102, E.180, T.182 Ligands: ATP.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.56, A:T.57, A:T.57, A:Q.100, A:Q.102 Salt bridges: A:R.82

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 16 residues within 4Å: Chain A: R.82, D.85, N.93, R.94, L.95, Y.98, Q.100, M.158, E.159, V.160, T.161, Q.162, T.182, G.184, R.187 Ligands: GLY.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.82, A:D.85, A:D.85, A:R.94, A:L.95, A:Y.98, A:Q.100, A:E.159, A:E.159, A:V.160, A:Q.162, A:G.184 Salt bridges: A:R.82, A:R.82, A:R.82 pi-Stacking: A:Y.98, A:Y.98 ATP.3: 13 residues within 4Å: Chain B: R.82, D.85, N.93, L.95, Y.98, E.152, E.159, V.160, T.161, Q.162, T.182, G.184, R.187 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:R.82, B:L.95, B:L.95, B:E.159, B:T.161, B:Q.162, B:R.187 Salt bridges: B:R.82, B:R.82 pi-Stacking: B:Y.98, B:Y.98

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.4: 6 residues within 4Å: Chain B: F.58, W.139, S.141, P.142, S.143, M.289 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.139, B:S.143, B:S.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP and glycine. To be Published

Release Date

2011-06-08

Peptides

Glycyl-tRNA synthetase alpha subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycyl-tRNA synthetase alpha subunit

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