SMTL ID : 3rfr.1

Crystal Structure of particulate methane monooxygenase (pMMO) from Methylocystis sp. strain M

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

hetero-3-2-3-3-mer

Ligands

1 x CUA: DINUCLEAR COPPER ION(Covalent)

CUA.1: 4 residues within 4Å: Chain A: H.29, E.31, H.133, H.135 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.29, A:H.29, A:H.133, A:H.135

9 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: F.162, D.175, N.178 No protein-ligand interaction detected (PLIP) ZN.3: 3 residues within 4Å: Chain G: D.129, H.133, H.146 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.129, G:D.129, G:H.133, G:H.146, H2O.1 ZN.4: 2 residues within 4Å: Chain G: D.93, H.177 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:D.93, G:D.93, G:H.177 ZN.5: 3 residues within 4Å: Chain H: D.129, H.133, H.146 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.129, H:H.133, H:H.146, H2O.1 ZN.6: 2 residues within 4Å: Chain H: D.93, H.177 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:D.93 ZN.7: 3 residues within 4Å: Chain I: D.129, H.133, H.146 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.129, I:D.129, I:H.133, I:H.146, H2O.1 ZN.8: 2 residues within 4Å: Chain I: D.93, H.177 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:D.93, I:H.177 ZN.10: 2 residues within 4Å: Chain J: F.162, N.178 No protein-ligand interaction detected (PLIP) ZN.12: 3 residues within 4Å: Chain K: K.160, F.162, N.178 No protein-ligand interaction detected (PLIP)

2 x CU: COPPER (II) ION(Non-covalent)

CU.9: 3 residues within 4Å: Chain J: H.29, H.133, H.135 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:H.29, J:H.133, J:H.135 CU.11: 3 residues within 4Å: Chain K: H.29, H.133, H.135 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:H.29, K:H.133, K:H.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, S.M. et al., Crystal Structure and Characterization of Particulate Methane Monooxygenase from Methylocystis species Strain M. Biochemistry (2011)

Release Date

2011-11-23

Peptides

PmoB: AJK
peptide: BC
PmoA: DEF
PmoC: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

J
E

K
I

B
D

C
H

D
J

E
B

F
F

G
C

H
G

I
K

Membrane

We predict this structure to be a membrane protein.
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PmoB

peptide

PmoA

PmoC

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