SMTL ID : 3riy.2 (1 other biounit)

Sirt5 is an NAD-dependent protein lysine demalonylase and desuccinylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.137, C.140, C.178, C.183 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.137, A:C.140, A:C.178, A:C.183

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 27 residues within 4Å: Chain A: G.29, A.30, G.31, S.33, A.34, E.35, V.38, P.39, T.40, F.41, R.42, Q.111, N.112, I.113, D.114, H.129, G.220, T.221, S.222, V.225, N.246, T.247, E.248, G.262, P.263, C.264 Chain B: X.6 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:A.30, A:F.41 Hydrogen bonds: A:A.30, A:E.35, A:F.41, A:Q.111, A:I.113, A:D.114, A:D.114, A:D.114, A:H.129, A:T.221, A:S.222, A:S.222, A:N.246, A:T.247, A:T.247, A:E.248, A:C.264 Water bridges: A:E.35, A:R.42, A:R.76, A:R.76, A:E.248 pi-Cation interactions: A:R.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, J. et al., Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase. Science (2011)

Release Date

2011-11-23

Peptides

NAD-dependent deacetylase sirtuin-5: A
peptide of histone 3 N-succinyl lysine 9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

NAD-dependent deacetylase sirtuin-5

peptide of histone 3 N-succinyl lysine 9

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