SMTL ID : 3rmu.2 (1 other biounit)

Crystal structure of human Methylmalonyl-CoA epimerase, MCEE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 3 residues within 4Å: Chain A: H.8, H.80, E.130 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.8, A:H.80, A:E.130, H2O.1, H2O.1 CO.9: 3 residues within 4Å: Chain B: H.8, H.80, E.130 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.8, B:H.80, B:E.130, H2O.4, H2O.4

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: V.42, H.79, H.80, F.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.79 EDO.3: 6 residues within 4Å: Chain A: M.2, L.3, V.85, D.94 Chain B: I.26, L.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.2, A:D.94 EDO.4: 3 residues within 4Å: Chain A: N.48, L.49, G.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.49 Water bridges: A:N.48 EDO.5: 2 residues within 4Å: Chain A: N.48, K.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.48, A:K.53, A:K.53 Water bridges: A:N.48 EDO.6: 6 residues within 4Å: Chain A: L.3, G.4 Chain B: A.29, Q.30, N.48, L.49 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.30, A:G.4 EDO.7: 3 residues within 4Å: Chain A: D.86, Q.133, A.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.133 Water bridges: A:D.86 EDO.8: 4 residues within 4Å: Chain A: A.20, K.24, S.32, E.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.24, A:K.24, A:S.32 EDO.10: 4 residues within 4Å: Chain B: L.57, I.66, H.80, F.118 No protein-ligand interaction detected (PLIP) EDO.11: 2 residues within 4Å: Chain B: N.89, V.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.89 EDO.12: 7 residues within 4Å: Chain A: I.26, L.27 Chain B: M.2, L.3, A.91, D.94, L.95 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.94, B:D.94

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.13: 6 residues within 4Å: Chain B: A.21, K.24, N.25, V.31, S.32, E.33 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.24, B:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of human Methylmalonyl-CoA epimerase, MCEE. To be Published

Release Date

2011-05-11

Peptides

Methylmalonyl-CoA epimerase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Methylmalonyl-CoA epimerase, mitochondrial

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