SMTL ID : 3roc.1

Crystal structure of human p38 alpha complexed with a pyrimidinone compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 29A: 3-{5-chloro-4-[(2,4-difluorobenzyl)oxy]-6-oxopyrimidin-1(6H)-yl}-N-(2-hydroxyethyl)-4-methylbenzamide(Non-covalent)

29A.1: 17 residues within 4Å: Chain A: V.30, V.38, A.51, V.52, K.53, L.75, I.84, L.86, L.104, V.105, T.106, H.107, L.108, M.109, G.110, A.111, D.112 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.53, A:I.84, A:L.104, A:D.112 Hydrogen bonds: A:M.109, A:G.110, A:G.110 Halogen bonds: A:H.107

1 x 29B: 4-[4-(4-fluorophenyl)-1H-pyrazol-3-yl]pyridine(Non-covalent)

29B.2: 12 residues within 4Å: Chain A: P.191, E.192, L.195, W.197, P.242, L.246, K.249, I.250, I.259, L.291, D.292, S.293 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.191, A:E.192, A:P.242, A:L.246, A:L.246, A:I.250, A:I.259, A:L.291 Hydrogen bonds: A:S.293, A:S.293 Water bridges: A:D.294 pi-Stacking: A:W.197, A:W.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devadas, B. et al., Substituted N-aryl-6-pyrimidinones: A new class of potent, selective, and orally active p38 MAP kinase inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-06-15

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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