SMTL ID : 3rrn.1

S. cerevisiae dbp5 l327v bound to gle1 h337r and ip6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: F.25, K.27, P.28, S.29, Q.32, Q.52, S.53, G.54, T.55, G.56, K.57, T.58, A.59, F.343 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.27, A:S.29, A:Q.32, A:Q.52, A:G.54, A:T.55, A:G.56, A:K.57, A:T.58, A:A.59 Salt bridges: A:K.57 pi-Stacking: A:F.25, A:F.25, A:F.343, A:F.343

3 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.2: 4 residues within 4Å: Chain A: G.1, A.2, H.41, N.42 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:G.1 Salt bridges: A:H.41 IHP.3: 9 residues within 4Å: Chain A: K.390, K.394 Chain B: I.19, K.23, K.92, R.96, R.133, K.136, K.137 14 PLIP interactions: 9 interactions with chain B, 5 interactions with chain A Salt bridges: B:K.92, B:K.92, B:K.92, B:R.96, B:R.133, B:R.133, B:K.136, B:K.136, B:K.137, A:K.390, A:K.390, A:K.390, A:K.394, A:K.394 IHP.4: 3 residues within 4Å: Chain A: K.387, K.391 Chain B: K.31 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:K.31, B:K.31, A:K.387, A:K.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montpetit, B. et al., A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export. Nature (2011)

Release Date

2011-05-18

Peptides

ATP-dependent RNA helicase DBP5: A
Nucleoporin GLE1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-dependent RNA helicase DBP5

Nucleoporin GLE1

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