- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3RW: [4-AMINO-7-(PROPAN-2-YL)-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL](6-{[2-(PYRIDIN-3-YL)ETHYL]AMINO}PYRAZIN-2-YL)METHANONE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: K.35, G.37, L.50, R.52, E.59
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.52, A:R.52, A:E.59
GOL.3: 8 residues within 4Å:- Chain A: R.58, E.59, Y.60, Y.98, S.112, Y.113
- Ligands: SO4.5, SO4.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.58, A:Y.113
GOL.4: 10 residues within 4Å:- Chain A: H.91, S.143, W.299, E.300, N.301, L.302, H.303
- Chain B: A.55, T.56, S.57
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.91, A:W.299, A:L.302, A:H.303, A:H.303, B:S.57
GOL.13: 5 residues within 4Å:- Chain B: K.35, G.37, L.50, R.52, E.59
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.52, B:R.52, B:E.59, B:E.59
GOL.14: 8 residues within 4Å:- Chain B: R.58, E.59, Y.60, Y.98, S.112, Y.113
- Ligands: SO4.16, SO4.18
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.58, B:Y.113
GOL.15: 10 residues within 4Å:- Chain A: A.55, T.56, S.57
- Chain B: H.91, S.143, W.299, E.300, N.301, L.302, H.303
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.91, B:W.299, B:L.302, B:H.303, B:H.303, A:S.57
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: R.58
- Chain B: P.92, H.303
- Ligands: GOL.3, SO4.7
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:H.303, A:R.58
SO4.6: 3 residues within 4Å:- Chain A: F.34, K.35, F.36
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.36
- Water bridges: A:F.34
SO4.7: 6 residues within 4Å:- Chain A: R.58, E.59
- Chain B: H.303, Q.304
- Ligands: GOL.3, SO4.5
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.59, A:E.59, B:Q.304
- Salt bridges: B:H.303
SO4.8: 1 residues within 4Å:- Chain A: E.283
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.283
SO4.9: 4 residues within 4Å:- Chain A: R.88, K.151
- Chain B: P.26, R.27
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.27
- Salt bridges: A:R.88, A:K.151
SO4.10: 3 residues within 4Å:- Chain A: G.43, S.44
- Ligands: 3RW.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.44
SO4.11: 5 residues within 4Å:- Chain A: K.28, R.83, T.100, F.101, Q.102
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.100, A:F.101, A:Q.102
- Salt bridges: A:K.28, A:R.83
SO4.16: 5 residues within 4Å:- Chain A: P.92, H.303
- Chain B: R.58
- Ligands: GOL.14, SO4.18
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.58, A:H.303
SO4.17: 3 residues within 4Å:- Chain B: F.34, K.35, F.36
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.36
- Water bridges: B:F.34
SO4.18: 6 residues within 4Å:- Chain A: H.303, Q.304
- Chain B: R.58, E.59
- Ligands: GOL.14, SO4.16
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.304, B:E.59
- Salt bridges: A:H.303
SO4.19: 1 residues within 4Å:- Chain B: E.283
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.283, B:E.283
SO4.20: 4 residues within 4Å:- Chain A: P.26, R.27
- Chain B: R.88, K.151
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.88, B:K.151
- Hydrogen bonds: A:R.27
SO4.21: 3 residues within 4Å:- Chain B: G.43, S.44
- Ligands: 3RW.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.44
SO4.22: 5 residues within 4Å:- Chain B: K.28, R.83, T.100, F.101, Q.102
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.100, B:F.101, B:Q.102
- Salt bridges: B:K.28, B:R.83
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murphy, S.T. et al., Discovery of Novel, Potent, and Selective Inhibitors of 3-Phosphoinositide-Dependent Kinase (PDK1). J.Med.Chem. (2011)
- Release Date
- 2011-11-16
- Peptides
- 3-phosphoinositide-dependent protein kinase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3RW: [4-AMINO-7-(PROPAN-2-YL)-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL](6-{[2-(PYRIDIN-3-YL)ETHYL]AMINO}PYRAZIN-2-YL)METHANONE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murphy, S.T. et al., Discovery of Novel, Potent, and Selective Inhibitors of 3-Phosphoinositide-Dependent Kinase (PDK1). J.Med.Chem. (2011)
- Release Date
- 2011-11-16
- Peptides
- 3-phosphoinositide-dependent protein kinase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A