- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3S1: 6-[2-(hydroxymethyl)phenyl]isoquinolin-1(2H)-one(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: R.58
- Chain B: P.92, H.303
- Ligands: SO4.4, GOL.6
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:H.303
- Salt bridges: B:H.303, A:R.58
SO4.3: 5 residues within 4Å:- Chain A: K.28, R.83, T.100, F.101, Q.102
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.28, A:R.83
SO4.4: 7 residues within 4Å:- Chain A: K.96, Y.98
- Chain B: K.96, Y.98
- Ligands: SO4.2, GOL.6, SO4.11
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Y.98, B:Y.98
- Salt bridges: A:K.96, B:K.96
SO4.5: 4 residues within 4Å:- Chain A: G.43, S.44, F.45, S.46
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.44, A:F.45, A:S.46
- Water bridges: A:S.46, A:S.46
SO4.9: 5 residues within 4Å:- Chain A: P.92, H.303
- Chain B: R.58
- Ligands: SO4.11, GOL.13
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Salt bridges: B:R.58, A:H.303
- Water bridges: A:H.303
SO4.10: 5 residues within 4Å:- Chain B: K.28, R.83, T.100, F.101, Q.102
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.100
- Salt bridges: B:K.28, B:R.83
SO4.11: 7 residues within 4Å:- Chain A: K.96, Y.98
- Chain B: K.96, Y.98
- Ligands: SO4.4, SO4.9, GOL.13
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.98, A:Y.98
- Salt bridges: A:K.96, B:K.96
SO4.12: 4 residues within 4Å:- Chain B: G.43, S.44, F.45, S.46
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.44, B:F.45, B:S.46
- Water bridges: B:S.46, B:S.46
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: E.59, Y.60, Y.98, S.112, Y.113
- Ligands: SO4.2, SO4.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.58, A:Y.113
GOL.7: 11 residues within 4Å:- Chain A: H.91, F.93, S.143, W.299, E.300, N.301, L.302, H.303
- Chain B: A.55, T.56, S.57
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:A.55, B:S.57, A:S.143, A:W.299, A:L.302, A:H.303
GOL.13: 7 residues within 4Å:- Chain B: E.59, Y.60, Y.98, S.112, Y.113
- Ligands: SO4.9, SO4.11
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.58, B:Y.113
- Water bridges: B:Y.98
GOL.14: 11 residues within 4Å:- Chain A: A.55, T.56, S.57
- Chain B: H.91, F.93, S.143, W.299, E.300, N.301, L.302, H.303
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:A.55, A:S.57, B:S.143, B:W.299, B:L.302, B:H.303
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johnson, M.C. et al., Novel isoquinolone PDK1 inhibitors discovered through fragment-based lead discovery. J Comput Aided Mol Des (2011)
- Release Date
- 2011-10-26
- Peptides
- 3-phosphoinositide-dependent protein kinase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3S1: 6-[2-(hydroxymethyl)phenyl]isoquinolin-1(2H)-one(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johnson, M.C. et al., Novel isoquinolone PDK1 inhibitors discovered through fragment-based lead discovery. J Comput Aided Mol Des (2011)
- Release Date
- 2011-10-26
- Peptides
- 3-phosphoinositide-dependent protein kinase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A