- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x LCN: 1,5-anhydro-D-arabino-hex-1-enitol(Non-covalent)
LCN.2: 13 residues within 4Å:- Chain A: G.303, Q.304, Y.307, H.438, A.439, R.580, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.1, NHF.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.438, A:E.675, A:A.676, A:F.677, A:G.678, A:L.679
LCN.10: 14 residues within 4Å:- Chain B: G.303, Q.304, Y.307, H.438, A.439, K.444, R.580, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.9, NHF.12
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:Q.304, B:H.438, B:E.675, B:A.676, B:F.677, B:G.678, B:L.679
- Water bridges: B:S.481
LCN.18: 13 residues within 4Å:- Chain C: G.303, Q.304, Y.307, H.438, A.439, R.580, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.17, NHF.21
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.438, C:H.438, C:A.676, C:F.677, C:G.678, C:L.679
LCN.26: 14 residues within 4Å:- Chain D: G.303, Q.304, H.438, A.439, K.444, R.580, K.585, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.25, NHF.30
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:E.675, D:A.676, D:F.677, D:G.678
- Water bridges: D:K.585, D:Y.674
- 4 x NHF: 1,5-anhydro-D-fructose(Non-covalent)
NHF.3: 12 residues within 4Å:- Chain A: G.303, Q.304, Y.307, H.438, A.439, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.1, LCN.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.438, A:E.675, A:A.676, A:F.677, A:G.678, A:L.679
NHF.12: 12 residues within 4Å:- Chain B: G.303, Q.304, Y.307, H.438, A.439, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.9, LCN.10
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.675, B:A.676, B:F.677, B:G.678, B:L.679
- Water bridges: B:S.481
NHF.21: 12 residues within 4Å:- Chain C: G.303, Q.304, Y.307, H.438, A.439, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.17, LCN.18
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.438, C:E.675, C:A.676, C:F.677, C:G.678, C:L.679
NHF.30: 13 residues within 4Å:- Chain D: G.303, Q.304, Y.307, H.438, A.439, S.481, E.675, A.676, F.677, G.678, L.679
- Ligands: UDP.25, LCN.26
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:S.481, D:S.481, D:E.675, D:E.675, D:A.676, D:F.677, D:G.678, D:L.679
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: G.350, E.351, R.352
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.352
SO4.5: 5 residues within 4Å:- Chain A: A.700, I.703, V.704, H.705, H.711
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.705
- Water bridges: A:I.703
- Salt bridges: A:H.711
SO4.6: 4 residues within 4Å:- Chain A: H.716, G.717, D.718, Q.719
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.717, A:D.718, A:D.718, A:D.718, A:Q.719, A:Q.719
- Salt bridges: A:H.716
SO4.11: 3 residues within 4Å:- Chain B: G.350, E.351, R.352
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.352
SO4.13: 5 residues within 4Å:- Chain B: A.700, I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.705
- Salt bridges: B:H.711
SO4.14: 4 residues within 4Å:- Chain B: H.716, G.717, D.718, Q.719
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.717, B:D.718, B:D.718, B:Q.719, B:Q.719
- Salt bridges: B:H.716
SO4.19: 3 residues within 4Å:- Chain C: G.350, E.351, R.352
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.352
SO4.20: 4 residues within 4Å:- Chain C: I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:H.705
- Salt bridges: C:H.711
SO4.22: 4 residues within 4Å:- Chain C: H.716, G.717, D.718, Q.719
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:G.717, C:D.718, C:D.718, C:D.718, C:Q.719, C:Q.719
- Salt bridges: C:H.716
SO4.27: 3 residues within 4Å:- Chain D: G.350, E.351, R.352
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.352
SO4.28: 4 residues within 4Å:- Chain D: I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.705
- Salt bridges: D:H.711
SO4.29: 4 residues within 4Å:- Chain D: H.716, G.717, D.718, Q.719
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.717, D:D.718, D:Q.719, D:Q.719
- Salt bridges: D:H.716
- 4 x MLA: MALONIC ACID(Non-covalent)
MLA.7: 6 residues within 4Å:- Chain A: F.710, T.723, D.726, F.727, K.730, H.737
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.710
- Hydrogen bonds: A:D.726
- Salt bridges: A:K.730, A:K.730, A:H.737
MLA.15: 7 residues within 4Å:- Chain B: F.692, F.710, T.723, D.726, F.727, K.730, H.737
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.710
- Salt bridges: B:K.730, B:K.730, B:H.737
MLA.23: 6 residues within 4Å:- Chain C: F.710, T.723, D.726, F.727, K.730, H.737
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:D.726, C:K.730
- Salt bridges: C:K.730, C:K.730, C:H.737
MLA.31: 6 residues within 4Å:- Chain D: F.710, T.723, D.726, F.727, K.730, H.737
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:F.710
- Salt bridges: D:K.730, D:K.730, D:H.737
- 4 x K: POTASSIUM ION(Non-covalent)
K.8: 6 residues within 4Å:- Chain A: L.184, R.185, H.187, N.193, L.194, L.196
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:L.184, A:R.185, A:H.187, A:L.194, A:L.196
K.16: 7 residues within 4Å:- Chain B: L.184, R.185, L.186, H.187, N.193, L.194, L.196
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:L.184, B:R.185, B:H.187, B:L.194, B:L.196
K.24: 7 residues within 4Å:- Chain C: L.184, R.185, L.186, H.187, N.193, L.194, L.196
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:L.184, C:R.185, C:H.187, C:L.194, C:L.196
K.32: 7 residues within 4Å:- Chain D: L.184, R.185, L.186, H.187, N.193, L.194, L.196
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:L.184, D:R.185, D:H.187, D:L.194, D:L.196
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zheng, Y. et al., The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications. J.Biol.Chem. (2011)
- Release Date
- 2011-08-24
- Peptides
- Sucrose synthase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x LCN: 1,5-anhydro-D-arabino-hex-1-enitol(Non-covalent)
- 4 x NHF: 1,5-anhydro-D-fructose(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x MLA: MALONIC ACID(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zheng, Y. et al., The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications. J.Biol.Chem. (2011)
- Release Date
- 2011-08-24
- Peptides
- Sucrose synthase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D