- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x FRU: beta-D-fructofuranose(Non-covalent)
FRU.2: 14 residues within 4Å:- Chain A: H.287, D.300, T.301, G.302, G.303, Q.304, R.382, Y.415, H.438, A.439, E.441, K.444, R.580
- Ligands: UDP.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.287, A:G.302, A:Q.304, A:Q.304, A:K.444
FRU.10: 14 residues within 4Å:- Chain B: H.287, D.300, T.301, G.302, G.303, Q.304, R.382, Y.415, H.438, A.439, E.441, K.444, R.580
- Ligands: UDP.9
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.287, B:D.300, B:Q.304, B:V.305, B:K.444, B:R.580
FRU.19: 13 residues within 4Å:- Chain C: H.287, D.300, G.302, G.303, Q.304, R.382, Y.415, H.438, A.439, E.441, K.444, R.580
- Ligands: UDP.18
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:H.287, C:G.302, C:G.302, C:Q.304, C:V.305, C:R.382, C:K.444, C:R.580
FRU.28: 13 residues within 4Å:- Chain D: H.287, D.300, G.302, G.303, Q.304, V.305, R.382, H.438, A.439, E.441, K.444, R.580
- Ligands: UDP.27
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:H.287, D:G.302, D:G.302, D:Q.304, D:V.305, D:R.382, D:K.444
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: G.350, E.351, R.352
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.350, A:R.352
SO4.4: 4 residues within 4Å:- Chain A: I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.705
- Salt bridges: A:H.711
SO4.5: 4 residues within 4Å:- Chain A: H.716, G.717, D.718, Q.719
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.716, A:D.718, A:Q.719, A:Q.719
- Salt bridges: A:H.716
SO4.6: 4 residues within 4Å:- Chain A: R.542, L.543, T.544, K.545
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.542, A:T.544, A:K.545
- Salt bridges: A:K.545
SO4.11: 3 residues within 4Å:- Chain B: G.350, E.351, R.352
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.352, B:L.353
SO4.12: 5 residues within 4Å:- Chain B: A.700, I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.705
- Salt bridges: B:H.711
SO4.13: 4 residues within 4Å:- Chain B: H.716, G.717, D.718, Q.719
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.716, B:G.717, B:D.718, B:Q.719, B:Q.719
- Salt bridges: B:H.716
SO4.14: 4 residues within 4Å:- Chain B: R.542, L.543, T.544, K.545
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.544, B:T.544, B:K.545
SO4.20: 3 residues within 4Å:- Chain C: G.350, E.351, R.352
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.352
SO4.21: 5 residues within 4Å:- Chain C: A.700, I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:H.705
- Salt bridges: C:H.711
SO4.22: 4 residues within 4Å:- Chain C: H.716, G.717, D.718, Q.719
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.716, C:G.717, C:D.718, C:Q.719, C:Q.719
- Salt bridges: C:H.716
SO4.23: 4 residues within 4Å:- Chain C: R.542, L.543, T.544, K.545
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.544, C:K.545
SO4.29: 3 residues within 4Å:- Chain D: G.350, E.351, R.352
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.352
SO4.30: 5 residues within 4Å:- Chain D: A.700, I.703, V.704, H.705, H.711
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.705
- Salt bridges: D:H.711
SO4.31: 5 residues within 4Å:- Chain D: Y.715, H.716, G.717, D.718, Q.719
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.717, D:D.718, D:Q.719
- Salt bridges: D:H.716
- 7 x MLA: MALONIC ACID(Non-covalent)
MLA.7: 6 residues within 4Å:- Chain A: F.710, T.723, D.726, F.727, K.730, H.737
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:K.730
- Hydrogen bonds: A:D.726
- Salt bridges: A:K.730, A:K.730, A:H.737
MLA.15: 7 residues within 4Å:- Chain B: F.692, F.710, T.723, D.726, F.727, K.730, H.737
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.710
- Salt bridges: B:K.730, B:K.730, B:H.737
MLA.16: 6 residues within 4Å:- Chain B: Q.292, D.293, Y.357, D.650, R.651, V.652
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:Y.357
- Hydrogen bonds: B:R.651
- Water bridges: B:R.313
- Salt bridges: B:R.651, B:R.651
MLA.24: 6 residues within 4Å:- Chain C: F.710, T.723, D.726, F.727, K.730, H.737
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.710
- Salt bridges: C:K.730, C:K.730, C:H.737
MLA.25: 2 residues within 4Å:- Chain C: L.72, E.98
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.98
MLA.32: 6 residues within 4Å:- Chain D: F.710, T.723, D.726, F.727, K.730, H.737
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:F.710
- Salt bridges: D:K.730, D:K.730, D:H.737
MLA.33: 5 residues within 4Å:- Chain D: H.119, N.132, T.134, E.136, R.509
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.134
- Salt bridges: D:H.119, D:H.119, D:R.509, D:R.509
- 4 x K: POTASSIUM ION(Non-covalent)
K.8: 7 residues within 4Å:- Chain A: L.184, R.185, L.186, H.187, N.193, L.194, L.196
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:L.184, A:R.185, A:L.194, A:L.196
K.17: 6 residues within 4Å:- Chain B: L.184, R.185, H.187, N.193, L.194, L.196
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:L.184, B:R.185, B:H.187, B:L.194, B:L.196
K.26: 7 residues within 4Å:- Chain C: L.184, R.185, L.186, H.187, N.193, L.194, L.196
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:L.184, C:R.185, C:L.194, C:L.196
K.34: 7 residues within 4Å:- Chain D: L.184, R.185, L.186, H.187, N.193, L.194, L.196
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:R.185, D:H.187, D:L.194, D:L.196
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zheng, Y. et al., The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications. J.Biol.Chem. (2011)
- Release Date
- 2011-08-24
- Peptides
- Sucrose synthase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x FRU: beta-D-fructofuranose(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 7 x MLA: MALONIC ACID(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zheng, Y. et al., The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications. J.Biol.Chem. (2011)
- Release Date
- 2011-08-24
- Peptides
- Sucrose synthase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H