- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.76 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: T.42, H.63, W.89, C.150, I.287, V.288
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.42
- Water bridges: A:T.42, A:H.63, A:W.89, A:T.154
GOL.4: 7 residues within 4Å:- Chain A: W.51, P.52, V.53, W.89, Y.116
- Chain D: F.274, L.278
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.53, A:N.113, A:Y.116
GOL.5: 6 residues within 4Å:- Chain A: H.41, T.42, H.45, G.263, L.264, I.287
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:L.264
- Water bridges: A:H.41, A:T.42, A:T.42, A:H.45
GOL.10: 6 residues within 4Å:- Chain B: T.42, H.63, W.89, C.150, I.287, V.288
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.42
- Water bridges: B:T.42, B:T.42, B:W.89
GOL.11: 7 residues within 4Å:- Chain B: W.51, P.52, V.53, W.89, Y.116
- Chain C: F.274, L.278
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.53, B:Y.116
- Water bridges: B:W.89
GOL.12: 7 residues within 4Å:- Chain B: H.41, T.42, H.45, W.51, G.263, L.264, I.287
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.264
- Water bridges: B:H.41, B:T.42, B:T.42
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: C.40, H.41, G.177, R.333
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.41
- Water bridges: A:T.42, A:G.177, A:L.178
- Salt bridges: A:H.41, A:R.333
SO4.7: 3 residues within 4Å:- Chain A: R.84, G.141, F.142
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.142
- Water bridges: A:V.143
- Salt bridges: A:R.84
SO4.13: 5 residues within 4Å:- Chain B: C.40, H.41, G.177, L.178, R.333
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:H.41
- Water bridges: B:T.42, B:G.177, B:G.177, B:G.177, B:L.178
- Salt bridges: B:H.41, B:R.333
SO4.14: 3 residues within 4Å:- Chain B: R.84, G.141, F.142
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:F.142
- Water bridges: B:R.84, B:R.84, B:V.143
- Salt bridges: B:R.84
SO4.18: 3 residues within 4Å:- Chain C: G.141, F.142, V.143
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:F.142, C:V.143
- Water bridges: C:E.144
SO4.22: 3 residues within 4Å:- Chain D: R.84, G.141, F.142
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:F.142
- Water bridges: D:V.143
- Salt bridges: D:R.84
SO4.23: 2 residues within 4Å:- Chain D: N.204, R.208
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.204
- Water bridges: D:R.208
- Salt bridges: D:R.208
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.15: 31 residues within 4Å:- Chain B: V.277
- Chain C: C.40, H.41, T.42, C.150, T.154, S.173, G.174, I.175, G.176, G.177, L.178, V.196, D.197, I.198, K.202, T.239, A.240, V.241, S.242, K.244, A.245, N.262, G.263, L.264, S.286, I.287, V.288, L.325, R.333
- Ligands: ZN.16
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:T.154, C:L.178
- Hydrogen bonds: C:H.41, C:T.42, C:G.177, C:L.178, C:D.197, C:V.241, C:S.242, C:S.242, C:K.244, C:N.262, C:L.264, C:V.288
- Water bridges: C:G.176, C:G.179, C:R.333
- Salt bridges: C:H.41, C:R.333
NAD.21: 31 residues within 4Å:- Chain A: V.277
- Chain D: C.40, H.41, T.42, H.45, C.150, T.154, S.173, G.174, I.175, G.176, G.177, L.178, V.196, D.197, I.198, K.202, T.239, A.240, V.241, S.242, A.245, N.262, G.263, L.264, S.286, I.287, V.288, L.325, R.333
- Ligands: ZN.19
26 PLIP interactions:26 interactions with chain D- Hydrophobic interactions: D:T.154, D:L.178, D:L.264
- Hydrogen bonds: D:H.41, D:T.42, D:H.45, D:I.175, D:I.175, D:G.177, D:L.178, D:D.197, D:V.241, D:S.242, D:S.242, D:N.262, D:L.264, D:V.288
- Water bridges: D:G.176, D:G.179, D:R.218, D:R.218, D:R.218, D:R.218, D:R.333
- Salt bridges: D:H.41, D:R.333
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hayes, R. et al., Crystal Structures and furfural reduction mechanism of a bacterial zinc-dependent alcohol dehydrogenase. To be Published
- Release Date
- 2012-06-13
- Peptides
- Zinc-containing alcohol dehydrogenase superfamily: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
ED
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.76 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hayes, R. et al., Crystal Structures and furfural reduction mechanism of a bacterial zinc-dependent alcohol dehydrogenase. To be Published
- Release Date
- 2012-06-13
- Peptides
- Zinc-containing alcohol dehydrogenase superfamily: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
ED
H