- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x FU2: FURFURAL(Non-covalent)
FU2.3: 9 residues within 4Å:- Chain A: C.40, T.42, H.63, W.89, C.150, L.264, I.287, V.288
- Ligands: ZN.1
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.287, A:V.288
- pi-Stacking: A:W.89, A:W.89
FU2.9: 11 residues within 4Å:- Chain B: C.40, T.42, W.51, H.63, W.89, C.150, L.264, I.287, V.288
- Ligands: NAD.6, ZN.7
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.264, B:I.287, B:V.288
- Hydrogen bonds: B:T.42
- pi-Stacking: B:W.89, B:W.89
FU2.14: 9 residues within 4Å:- Chain C: T.42, W.51, H.63, W.89, C.150, L.264, I.287, V.288
- Chain D: L.278
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:I.287, C:V.288, D:L.278
- Hydrogen bonds: C:T.42
- pi-Stacking: C:W.89, C:W.89
FU2.20: 12 residues within 4Å:- Chain C: L.278
- Chain D: C.40, T.42, W.51, H.63, W.89, C.150, L.264, I.287, V.288
- Ligands: ZN.17, NAD.19
5 PLIP interactions:1 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:L.278, D:I.287, D:V.288
- pi-Stacking: D:W.89, D:W.89
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: C.40, H.41, G.177, L.178, R.333
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.41, A:L.178
- Water bridges: A:G.177, A:G.177
- Salt bridges: A:H.41, A:R.333
SO4.5: 3 residues within 4Å:- Chain A: R.84, G.141, F.142
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.84, A:F.142
- Water bridges: A:R.84, A:V.143
SO4.10: 6 residues within 4Å:- Chain B: R.84, G.141, F.142
- Chain D: G.141, E.144
- Ligands: SO4.21
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:G.141, B:F.142
- Water bridges: D:E.144, B:V.143
- Salt bridges: D:K.307, B:R.84
SO4.11: 2 residues within 4Å:- Chain B: N.204, R.208
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.208, B:R.208, B:R.208
- Salt bridges: B:R.208
SO4.15: 5 residues within 4Å:- Chain C: C.40, H.41, G.177, L.178, R.333
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:H.41
- Water bridges: C:T.42, C:G.177, C:L.178, C:R.333
- Salt bridges: C:H.41, C:R.333
SO4.16: 3 residues within 4Å:- Chain C: R.84, G.141, F.142
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:F.142
- Water bridges: C:Y.68, C:R.84, C:V.143
- Salt bridges: C:R.84
SO4.21: 5 residues within 4Å:- Chain B: R.340
- Chain D: G.141, F.142, V.143
- Ligands: SO4.10
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain D- Salt bridges: B:R.340
- Hydrogen bonds: D:F.142, D:V.143
- Water bridges: D:E.144
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.6: 32 residues within 4Å:- Chain A: V.277
- Chain B: C.40, H.41, T.42, H.45, C.150, T.154, S.173, G.174, I.175, G.176, G.177, L.178, D.197, I.198, K.202, T.239, A.240, V.241, S.242, K.244, A.245, N.262, G.263, L.264, S.286, I.287, V.288, L.325, R.333
- Ligands: ZN.7, FU2.9
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:T.154, B:L.178
- Hydrogen bonds: B:H.41, B:H.45, B:I.175, B:G.177, B:L.178, B:V.241, B:S.242, B:N.262, B:L.264, B:V.288
- Water bridges: B:G.176, B:G.179, B:R.333, B:R.333
- Salt bridges: B:H.41, B:R.333
NAD.19: 30 residues within 4Å:- Chain C: V.277
- Chain D: C.40, H.41, T.42, H.45, C.150, T.154, G.174, I.175, G.176, G.177, L.178, D.197, I.198, K.202, T.239, A.240, V.241, S.242, A.245, N.262, G.263, L.264, S.286, I.287, V.288, L.325, R.333
- Ligands: ZN.17, FU2.20
20 PLIP interactions:20 interactions with chain D- Hydrophobic interactions: D:T.154
- Hydrogen bonds: D:H.41, D:T.42, D:H.45, D:I.175, D:G.177, D:L.178, D:K.202, D:K.202, D:V.241, D:S.242, D:N.262, D:L.264, D:V.288
- Water bridges: D:G.176, D:G.179, D:Q.248, D:R.333
- Salt bridges: D:H.41, D:R.333
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hayes, R. et al., Crystal structures and furfural reduction mechanism of a bacterial zinc-dependent alcohol dehydrogenase. To be Published
- Release Date
- 2012-06-13
- Peptides
- Zinc-containing alcohol dehydrogenase superfamily: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
GC
CD
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x FU2: FURFURAL(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hayes, R. et al., Crystal structures and furfural reduction mechanism of a bacterial zinc-dependent alcohol dehydrogenase. To be Published
- Release Date
- 2012-06-13
- Peptides
- Zinc-containing alcohol dehydrogenase superfamily: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
GC
CD
E