SMTL ID : 3s88.2 (4 other biounits)

Crystal structure of Sudan Ebolavirus Glycoprotein (strain Gulu) bound to 16F6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

hetero-12-12-12-12-mer

Ligands

24 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain B: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: L.55, D.141, A.143 Chain C: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain F: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain F: L.55, D.141, A.143 Chain G: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 6 residues within 4Å: Chain J: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain J: L.55, D.141, A.143 Chain K: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain N: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain N: L.55, D.141, A.143 Chain O: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 6 residues within 4Å: Chain R: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain R: L.55, D.141, A.143 Chain S: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 6 residues within 4Å: Chain V: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 5 residues within 4Å: Chain V: L.55, D.141, A.143 Chain W: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 6 residues within 4Å: Chain Z: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 5 residues within 4Å: Chain 0: N.91, T.94 Chain Z: L.55, D.141, A.143 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 6 residues within 4Å: Chain 3: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 5 residues within 4Å: Chain 3: L.55, D.141, A.143 Chain 4: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 6 residues within 4Å: Chain 7: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.18: 5 residues within 4Å: Chain 7: L.55, D.141, A.143 Chain 8: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 6 residues within 4Å: Chain b: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 5 residues within 4Å: Chain b: L.55, D.141, A.143 Chain c: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 6 residues within 4Å: Chain f: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.22: 5 residues within 4Å: Chain f: L.55, D.141, A.143 Chain g: N.91, T.94 No protein-ligand interaction detected (PLIP) NAG-NAG.23: 6 residues within 4Å: Chain j: Y.202, L.203, E.204, F.239, N.242, H.246 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 5 residues within 4Å: Chain j: L.55, D.141, A.143 Chain k: N.91, T.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dias, J.M. et al., A shared structural solution for neutralizing ebolaviruses. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-12-07

Peptides

16F6 - Heavy chain: AEIMQUY26aei
Envelope glycoprotein: BFJNRVZ37bfj
Envelope glycoprotein: CGKOSW048cgk
16F6 - Light chain: DHLPTX159dhl

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

E
H

I
H

M
H

Q
H

U
H

Y
H

2
H

6
H

a
H

e
H

i
H

B
I

F
I

J
I

N
I

R
I

V
I

Z
I

3
I

7
I

b
I

f
I

j
I

C
J

G
J

K
J

O
J

S
J

W
J

0
J

4
J

8
J

c
J

g
J

k
J

D
L

H
L

L
L

P
L

T
L

X
L

1
L

5
L

9
L

d
L

h
L

l
L

16F6 - Heavy chain

Envelope glycoprotein

Envelope glycoprotein

16F6 - Light chain

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