SMTL ID : 3s95.1 (1 other biounit)

Crystal structure of the human LIMK1 kinase domain in complex with staurosporine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x STU: STAUROSPORINE(Non-covalent)

STU.1: 16 residues within 4Å: Chain A: L.18, G.19, A.26, V.39, K.41, E.57, L.70, T.86, E.87, Y.88, I.89, G.92, T.93, H.137, N.138, L.140 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.18, A:L.18, A:L.18, A:K.41, A:L.70, A:T.93, A:L.140 Hydrogen bonds: A:T.86, A:I.89, A:H.137

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: L.64, E.65 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.65, A:F.72

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: S.1, M.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.1 GOL.4: 4 residues within 4Å: Chain A: G.217, R.218, Y.243 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.218 Water bridges: A:R.218 GOL.5: 3 residues within 4Å: Chain A: P.186, Y.187, P.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.186, A:R.228 Water bridges: A:R.228 GOL.6: 3 residues within 4Å: Chain A: R.242, Y.243 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.242 Water bridges: A:Y.243, A:Y.243, A:Y.243 GOL.7: 5 residues within 4Å: Chain A: R.258, E.265, K.266, R.267, K.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.258, A:R.258, A:E.265 Water bridges: A:K.202 GOL.8: 2 residues within 4Å: Chain A: P.292, Q.293 No protein-ligand interaction detected (PLIP) GOL.9: 3 residues within 4Å: Chain A: E.274, H.275, E.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.274 GOL.10: 1 residues within 4Å: Chain A: S.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.1, A:S.1 GOL.11: 5 residues within 4Å: Chain A: L.240, D.241, R.242, Y.243, C.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.240

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 2 residues within 4Å: Chain A: P.292, Q.293 Ligand excluded by PLIP

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.13: 4 residues within 4Å: Chain A: R.95, K.99, H.137, N.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.95, A:H.137 Water bridges: A:N.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beltrami, A. et al., Crystal structure of the human LIMK1 kinase domain in complex with staurosporine. To be Published

Release Date

2011-07-06

Peptides

LIM domain kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIM domain kinase 1

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