- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: I.12, D.13, N.147, R.148, R.151
- Ligands: MG.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.13, A:R.148, A:R.151
- Water bridges: A:N.147, A:R.148
GOL.7: 5 residues within 4Å:- Chain A: Y.91, A.96, R.99, A.100, I.103
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.91, A:R.99
GOL.8: 2 residues within 4Å:- Chain A: Y.21, K.22
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.22, A:K.22
GOL.12: 6 residues within 4Å:- Chain B: I.12, D.13, N.147, R.148, R.151
- Ligands: MG.13
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.13, B:R.148, B:R.151
- Water bridges: B:N.147, B:R.148
GOL.16: 5 residues within 4Å:- Chain B: Y.91, A.96, R.99, A.100, I.103
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.91, B:R.99
GOL.17: 2 residues within 4Å:- Chain B: Y.21, K.22
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.22, B:K.22
GOL.21: 6 residues within 4Å:- Chain C: I.12, D.13, N.147, R.148, R.151
- Ligands: MG.22
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.13, C:R.148, C:R.151
- Water bridges: C:N.147, C:R.148
GOL.25: 5 residues within 4Å:- Chain C: Y.91, A.96, R.99, A.100, I.103
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.91, C:R.99
GOL.26: 2 residues within 4Å:- Chain C: Y.21, K.22
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.22, C:K.22
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: T.145, P.146, N.147, R.148
- Ligands: GOL.3
No protein-ligand interaction detected (PLIP)MG.6: 1 residues within 4Å:- Chain A: E.14
No protein-ligand interaction detected (PLIP)MG.13: 5 residues within 4Å:- Chain B: T.145, P.146, N.147, R.148
- Ligands: GOL.12
No protein-ligand interaction detected (PLIP)MG.15: 1 residues within 4Å:- Chain B: E.14
No protein-ligand interaction detected (PLIP)MG.22: 5 residues within 4Å:- Chain C: T.145, P.146, N.147, R.148
- Ligands: GOL.21
No protein-ligand interaction detected (PLIP)MG.24: 1 residues within 4Å:- Chain C: E.14
No protein-ligand interaction detected (PLIP)- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 7 residues within 4Å:- Chain A: Q.126, C.128
- Chain B: C.128, W.129, D.130, C.131
- Ligands: ZN.1
Ligand excluded by PLIPCL.9: 8 residues within 4Å:- Chain A: C.131
- Chain B: C.131
- Chain C: C.131
- Ligands: ZN.2, ZN.11, CL.18, ZN.20, CL.27
Ligand excluded by PLIPCL.14: 7 residues within 4Å:- Chain B: Q.126, C.128
- Chain C: C.128, W.129, D.130, C.131
- Ligands: ZN.10
Ligand excluded by PLIPCL.18: 8 residues within 4Å:- Chain A: C.131
- Chain B: C.131
- Chain C: C.131
- Ligands: ZN.2, CL.9, ZN.11, ZN.20, CL.27
Ligand excluded by PLIPCL.23: 7 residues within 4Å:- Chain A: C.128, W.129, D.130, C.131
- Chain C: Q.126, C.128
- Ligands: ZN.19
Ligand excluded by PLIPCL.27: 8 residues within 4Å:- Chain A: C.131
- Chain B: C.131
- Chain C: C.131
- Ligands: ZN.2, CL.9, ZN.11, CL.18, ZN.20
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Laganowsky, A. et al., An approach to crystallizing proteins by metal-mediated synthetic symmetrization. Protein Sci. (2011)
- Release Date
- 2011-09-21
- Peptides
- Lysozyme: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
DC
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Laganowsky, A. et al., An approach to crystallizing proteins by metal-mediated synthetic symmetrization. Protein Sci. (2011)
- Release Date
- 2011-09-21
- Peptides
- Lysozyme: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
DC
D