SMTL ID : 3sku.2 (2 other biounits)

Herpes simplex virus glycoprotein D bound to the human receptor nectin-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: D.7, V.91, N.109 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.2: 5 residues within 4Å: Chain B: L.86, W.119, N.146, N.172, T.174 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: I.40, Q.41, P.92, N.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.41 NAG.4: 2 residues within 4Å: Chain B: T.41, N.42 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Di Giovine, P. et al., Structure of herpes simplex virus glycoprotein d bound to the human receptor nectin-1. Plos Pathog. (2011)

Release Date

2011-10-12

Peptides

Glycoprotein D: A
Poliovirus receptor-related protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Glycoprotein D

Poliovirus receptor-related protein 1

Related Entries With Identical Sequence