SMTL ID : 3sku.3 (2 other biounits)

Herpes simplex virus glycoprotein D bound to the human receptor nectin-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: D.7, N.109 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.2: 4 residues within 4Å: Chain B: I.13, L.86, N.146, N.172 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.146

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: I.40, Q.41, N.94, T.116, N.171 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.40, A:Q.41 Hydrogen bonds: A:Q.41 NAG.4: 3 residues within 4Å: Chain B: T.41, N.42, S.44 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Di Giovine, P. et al., Structure of herpes simplex virus glycoprotein d bound to the human receptor nectin-1. Plos Pathog. (2011)

Release Date

2011-10-12

Peptides

Glycoprotein D: A
Poliovirus receptor-related protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

Glycoprotein D

Poliovirus receptor-related protein 1

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