SMTL ID : 3sow.2 (2 other biounits)

Structure of UHRF1 PHD finger in complex with histone H3K4me3 1-9 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- M3L- GLN- THR: Histone H3(Non-covalent)

ALA-ARG-THR-M3L-GLN-THR.1: 14 residues within 4Å: Chain A: C.19, P.30, D.31, Q.33, L.34, M.35, C.36, D.37, D.40, V.55, P.56, E.58, D.59, W.61 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.30, A:Q.33, A:V.55, A:W.61 Hydrogen bonds: A:P.30, A:Q.33, A:M.35, A:C.36, A:E.58 Water bridges: A:D.59 Salt bridges: A:D.37, A:D.40

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.21, C.24, H.44, C.47 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:H.44, A:C.47 ZN.3: 4 residues within 4Å: Chain A: C.5, C.8, C.16, C.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:C.16, A:C.19 ZN.4: 4 residues within 4Å: Chain A: C.36, C.39, C.63, C.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.36, A:C.39, A:C.63, A:C.66 ZN.5: 2 residues within 4Å: Chain A: H.22, E.65 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.22, A:E.65, A:E.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajakumara, E. et al., PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression. Mol.Cell (2011)

Release Date

2011-08-03

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase UHRF1

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