SMTL ID : 3suu.1

Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with Gal-PUGNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.129, S.130, N.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.129, A:T.129, A:S.130, A:N.131

1 x OGN: [(Z)-[(3R,4R,5R,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-ylidene]amino] N-phenylcarbamate(Non-covalent)

OGN.2: 14 residues within 4Å: Chain A: R.193, H.281, V.307, D.344, E.345, W.375, W.393, Y.418, D.420, M.421, L.431, W.433, W.464, E.466 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.344, A:W.375, A:W.393, A:W.433, A:W.433, A:W.464 Hydrogen bonds: A:R.193, A:R.193, A:D.222, A:D.344, A:D.344, A:Y.418, A:D.420, A:W.433, A:E.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumida, T. et al., Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach. Org.Biomol.Chem. (2012)

Release Date

2012-06-06

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-hexosaminidase

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