SMTL ID : 3sw2.1

X-ray crystal structure of human FXA in complex with 6-chloro-N-((3S)-2-oxo-1-(2-oxo-2-((5S)-8-oxo-5,6-dihydro-1H-1,5-methanopyrido[1,2-a][1,5]diazocin-3(2H,4H,8H)-yl)ethyl)piperidin-3-yl)naphthalene-2-sulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FI1: 6-chloro-N-((3S)-2-oxo-1-(2-oxo-2-((5S)-8-oxo-5,6-dihydro-1H-1,5-methanopyrido[1,2-a][1,5]diazocin-3(2H,4H,8H)-yl)ethyl)piperidin-3-yl)naphthalene-2-sulfonamide(Non-covalent)

FI1.1: 18 residues within 4Å: Chain B: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, Q.182, S.185, V.203, S.204, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.85, B:Y.85, B:F.162, B:A.180, B:V.203 Hydrogen bonds: B:G.206

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain B: Y.173, D.174, A.210, R.211, K.214 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.173, B:K.214

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain B: D.56, N.58, Q.61, E.63, E.66 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.56, B:N.58, B:Q.61, B:E.66

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: F.55 Chain B: L.109, P.110, E.111, L.225, D.229 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Arylsulfonamidopiperidone derivatives as a novel class of factor Xa inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-11-16

Peptides

Coagulation factor X: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor X

Coagulation factor X

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