SMTL ID : 3swi.1

E. Cloacae MurA in complex with Enolpyruvyl-UDP-N-acetylgalactosamine and covalent adduct of PEP with CYS115

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x MOE: METHOXY-ETHOXYL(Non-covalent)

MOE.1: 5 residues within 4Å: Chain A: R.120, P.121, H.125, G.164 Ligands: UPN.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.121 MOE.2: 3 residues within 4Å: Chain A: Q.13, K.248, V.250 No protein-ligand interaction detected (PLIP)

3 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.3: 5 residues within 4Å: Chain A: S.81, Q.108, E.140, Y.142, K.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.144 PG0.4: 3 residues within 4Å: Chain A: K.55, Q.59, L.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.55 PG0.5: 6 residues within 4Å: Chain A: V.192, D.193, N.196, Y.226, L.229, Q.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.193, A:N.196, A:Y.226, A:Y.226

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain A: C.115, R.397 Ligands: UD2.7 No protein-ligand interaction detected (PLIP)

1 x UD2: URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE(Non-covalent)

UD2.7: 9 residues within 4Å: Chain A: M.1, K.88, T.89, G.114, C.115, A.116, Y.393, H.394 Ligands: MG.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.88, A:G.114, A:A.116, A:Y.393 Salt bridges: A:H.394

1 x UPN: 2-{[(2R,3R,4R,5R,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}prop-2-enoic acid(Non-covalent)

UPN.8: 22 residues within 4Å: Chain A: K.22, N.23, W.95, A.119, R.120, P.121, V.122, D.123, L.124, H.125, K.160, V.161, S.162, V.163, G.164, D.305, I.327, F.328, R.331, L.370, R.371 Ligands: MOE.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.95 Hydrogen bonds: A:N.23, A:D.123, A:L.124, A:H.125, A:V.163, A:G.164, A:D.305 Salt bridges: A:K.22, A:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA). J.Biol.Chem. (2012)

Release Date

2012-03-07

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

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