SMTL ID : 3t6v.1 (3 other biounits)

Crystal Structure of Laccase from Steccherinum ochraceum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: T.307, N.414, S.417, N.418, D.420 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: Q.323, N.331, E.385, A.387, P.389, N.436 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.330

4 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: H.397, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.397, A:C.453, A:H.458 CU.4: 5 residues within 4Å: Chain A: H.65, H.67, W.108, H.110, H.454 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:H.110, A:H.454, H2O.14 CU.5: 4 residues within 4Å: Chain A: H.112, H.402, F.450, H.452 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.112, A:H.402, A:H.452, H2O.14 CU.6: 5 residues within 4Å: Chain A: H.65, H.67, G.68, H.400, H.402 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.65, A:H.400, H2O.3

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: G.258, N.259, T.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.259, A:N.259 Water bridges: A:N.259, A:V.293, A:V.293 SO4.8: 1 residues within 4Å: Chain A: R.263 3 PLIP interactions: 3 interactions with chain A Water bridges: A:W.261, A:F.273 Salt bridges: A:R.263 SO4.9: 2 residues within 4Å: Chain A: A.14, D.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.15 SO4.10: 4 residues within 4Å: Chain A: T.365, A.366, A.367, S.377 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.366, A:A.367, A:S.377 Water bridges: A:S.377, A:S.377

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 8 residues within 4Å: Chain A: A.81, H.112, L.113, T.114, F.348, P.350, F.450, L.459 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.114 Water bridges: A:H.112, A:L.113, A:T.114, A:T.114, A:T.114, A:D.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraroni, M. et al., Reaction intermediates and redox state changes in a blue laccase from Steccherinum ochraceum observed by crystallographic high/low X-ray dose experiments. J.Inorg.Biochem. (2012)

Release Date

2012-04-18

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase

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