SMTL ID : 3t6z.3 (3 other biounits)

Crystal Structure of Steccherinum ochraceum Laccase obtained by multi-crystals composite data collection technique (60% dose)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 6 residues within 4Å: Chain A: T.307, N.414, T.416, S.417, N.418, D.421 No protein-ligand interaction detected (PLIP)

4 x CU: COPPER (II) ION(Non-covalent)

CU.2: 5 residues within 4Å: Chain A: H.397, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.397, A:C.453, A:H.458 CU.3: 6 residues within 4Å: Chain A: H.65, H.67, W.108, H.110, H.454 Ligands: CU.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:H.110, A:H.454, H2O.9 CU.4: 4 residues within 4Å: Chain A: H.112, H.400, H.402, H.452 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.112, A:H.402, A:H.452, H2O.9 CU.5: 5 residues within 4Å: Chain A: H.65, H.67, H.400, H.402 Ligands: CU.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.65, A:H.400, H2O.16

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: T.365, A.366, A.367, S.377 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.367 Water bridges: A:S.377, A:S.377

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: H.180, V.181, N.182, V.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.182, A:V.183 Water bridges: A:V.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraroni, M. et al., Reaction intermediates and redox state changes in a blue laccase from Steccherinum ochraceum observed by crystallographic high/low X-ray dose experiments. J.Inorg.Biochem. (2012)

Release Date

2012-04-18

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Laccase

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