SMTL ID : 3tda.1 (3 other biounits)

Competitive replacement of thioridazine by prinomastat in crystals of cytochrome P450 2D6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: R.79, V.97, F.98, W.106, R.110, D.279, L.280, A.283, G.284, T.287, T.288, T.291, Q.342, I.347, V.348, V.352, H.354, L.377, P.413, F.414, S.415, R.419, A.420, C.421, L.422, G.423 Ligands: PN0.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.98, A:F.98, A:L.280, A:I.347, A:V.348, A:V.352, A:L.377, A:F.414, A:L.422 Hydrogen bonds: A:S.415, A:S.415 Salt bridges: A:R.79, A:R.79, A:R.110, A:H.354, A:R.419 Metal complexes: A:C.421

1 x PN0: Prinomastat(Non-covalent)

PN0.2: 17 residues within 4Å: Chain A: L.88, F.90, F.98, L.99, L.191, E.194, Q.222, I.275, A.278, D.279, S.282, A.283, V.286, T.287, F.461, L.462 Ligands: HEM.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.98, A:F.98, A:L.191, A:Q.222, A:A.278, A:A.283, A:V.286, A:T.287, A:F.461, A:L.462 Hydrogen bonds: A:Q.222, A:D.279, A:S.282, A:S.282 Salt bridges: A:E.194

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.236, D.248, E.251 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.236, A:D.248, A:E.251 ZN.4: 3 residues within 4Å: Chain A: D.400, Q.402, H.404 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.400, A:H.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, A. et al., Contributions of Ionic Interactions and Protein Dynamics to Cytochrome P450 2D6 (CYP2D6) Substrate and Inhibitor Binding. J.Biol.Chem. (2015)

Release Date

2012-08-15

Peptides

Cytochrome P450 2D6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 2D6

Related Entries With Identical Sequence